To investigate the energy, matter and reactive and non-reactive trace gas exchange between the atmosphere and a spruce forest in the German mountain region, two intensive measuring periods were conducted at the FLUXNET site DE-Bay (<i>Waldstein-Weidenbrunnen</i>) in September/October 2007 and June/July 2008. They were part of the project "ExchanGE processes in mountainous Regions" (EGER). Beyond a brief description of the experiment, the main focus of the paper concerns the coupling between the trunk space, the canopy and the above-canopy atmosphere. Therefore, relevant coherent structures were analyzed for different in- and above canopy layers, coupling between layers was classified according to already published procedures, and gradients and fluxes of meteorological quantities as well as concentrations of non-reactive and reactive trace compounds have been sorted along the coupling classes. Only in the case of a fully coupled system, it could be shown, that fluxes measured above the canopy are related to gradients between the canopy and the above-canopy atmosphere. Temporal changes of concentration differences between top of canopy and the forest floor, particularly those of reactive trace gases (NO, NO₂, O₃, and HONO) could only be interpreted on the basis of the coupling stage. Consequently, only concurrent and vertically resolved measurements of micrometeorological (turbulence) quantities and fluxes (gradients) of trace compounds will lead to a better understanding of the forest-atmosphere interaction

The 2015/16 El Niño event caused unprecedented drought and warming in the Amazon basin. How tropical forests react to such extreme events in terms of volatile organic compound (VOC) emissions is of interest as the frequency of these events is predicted to increase through climate change. The diverse VOCs emitted can be significant for plants' carbon budgets, influence ozone and particle production, and through their reactivity impact OH concentrations. Total OH reactivity is a directly measureable quantity that gives the reaction frequency of OH radicals with all reactive species in the atmosphere in s−1. Here we present a comparison of the OH reactivity diel cycle from November 2015, i.e., extreme drought and elevated temperatures associated with strong El Niño conditions, with November 2012, a “normal” El Niño Southern Oscillation (ENSO)-neutral period. Interestingly, the diel maximum of OH reactivity during the El Niño event occurred at sunset instead of, under normal conditions, early afternoon. The absolute total diel OH reactivity, however, did not change significantly. Daytime OH reactivity averages were 24.3 ± 14.5 s−1 in 2012 and 24.6 ± 11.9 s−1 in 2015, respectively. Our findings suggest that a combination of stronger turbulent transport above the canopy with stress-related monoterpene and, possibly, other biogenic volatile organic compound (BVOC) emissions were responsible for the increased reactivity at sunset.

Abstract. Nocturnal turbulent kinetic energy (TKE) and fluxes of energy, CO2 and O3 between the Amazon forest and the atmosphere are evaluated for a 20-day campaign at the Amazon Tall Tower Observatory (ATTO) site. The distinction of these quantities between fully turbulent (weakly stable) and intermittent (very stable) nights is discussed. Spectral analysis indicates that low-frequency, nonturbulent fluctuations are responsible for a large portion of the variability observed on intermittent nights. In these conditions, the low-frequency exchange may dominate over the turbulent transfer. In particular, we show that within the canopy most of the exchange of CO2 and H2O happens on temporal scales longer than 100 s. At 80 m, on the other hand, the turbulent fluxes are almost absent in such very stable conditions, suggesting a boundary layer shallower than 80 m. The relationship between TKE and mean winds shows that the stable boundary layer switches from the very stable to the weakly stable regime during intermittent bursts of turbulence. In general, fluxes estimated with long temporal windows that account for low-frequency effects are more dependent on the stability over a deeper layer above the forest than they are on the stability between the top of the canopy and its interior, suggesting that low-frequency processes are controlled over a deeper layer above the forest.

On the basis of measurements over different surfaces, an inertial sublayer (ISL), where Monin‐Obukhov Similarity Theory applies, exists above z=3h, where h is canopy height. The roughness sublayer is within h