Trophic ecology is the study of feeding interactions and food acquisition by organisms. It includes the causes and consequences of those behaviours at all levels of biological organisation. As a field of research, it crosses many disciplinary boundaries and provides knowledge that is pertinent to many other areas of ecology. Here we list and categorise the methods available to trophic ecologists whose toolbox has broadened considerably in recent years. They encompass empirical and numerical approaches with focus ranging from molecules to ecosystems. We further examine the relationship of each method to features such as the scale of observation (from microbes to largest organisms) and organisational level (from individuals to ecosystems) as well as the ecological question the method is capable of answering (from detecting predator-prey relationships to studying implications and consequences at different scales). Our survey reveals a very wide range of methodologies, each more-or-less appropriate for a particular line of research. It also identifies deficits, for example, trophic interactions at microscopic scales, for which empirical methods have hardly been used, as well as trophic models that have failed to consider fluxes at the ecosystem scale. Furthermore, we note that the combination of methodologies remains under-exploited despite great opportunities to solve complex ecological questions and to foster the emergence of new insights and hypotheses regarding organism, population and/or ecosystem properties.

Aim The movement patterns of marine top predators are likely to reflect responses to prey distributions, which themselves can be influenced by factors such as climate and fisheries. The critically endangered Balearic shearwater Puffinus mauretanicus has shown a recent northwards shift in non-breeding distribution, tentatively linked to changing forage fish distribution and/or fisheries activity. Here, we provide the first information on the foraging ecology of this species during the non-breeding period.Location Breeding grounds in Mallorca, Spain, and non-breeding areas in the north-east Atlantic and western Mediterranean.Methods Birdborne geolocation was used to identify non-breeding grounds. Information on feather moult (from digital images) and stable isotopes (of both primary wing feathers and potential prey items) was combined to infer foraging behaviour during the non-breeding season.Results Almost all breeding shearwaters (n = 32) migrated to non-breeding areas in the Atlantic from southern Iberia to the French Atlantic coast, where the majority of primary feather moult took place. Birds foraging off western Iberia yielded feather isotope ratios consistent with a diet composed largely of pelagic fishes, while the isotopic composition of birds foraging in the Bay of Biscay suggested an additional contribution of benthic prey, most likely from demersal fishery discards.Main conclusions Combined application of geolocators and stable isotopes indicates spatial variation in dietary behaviour and interactions with fisheries. Our results imply that both pelagic fish and fisheries discards are important components of diet during the non-breeding period, which may have implications for the at-sea distribution of this migratory species. These findings will contribute to bycatch mitigation in non-breeding areas and provide baseline data that should inform future assessment of seabird responses to changing fishery practices and prey distributions.