The ancestors of fungi are believed to be simple aquatic forms with flagellated spores, similar to members of the extant phylum Chytridiomycota (chytrids). Current classifications assume that chytrids form an early-diverging clade within the kingdom Fungi and imply a single loss of the spore flagellum, leading to the diversification of terrestrial fungi. Here we develop phylogenetic hypotheses for Fungi using data from six gene regions and nearly 200 species. Our results indicate that there may have been at least four independent losses of the flagellum in the kingdom Fungi. These losses of swimming spores coincided with the evolution of new mechanisms of spore dispersal, such as aerial dispersal in mycelial groups and polar tube eversion in the microsporidia (unicellular forms that lack mitochondria). The enigmatic microsporidia seem to be derived from an endoparasitic chytrid ancestor similar to Rozella allomycis, on the earliest diverging branch of the fungal phylogenetic tree.

Fungal biodiversity in freshwater, brackish and marine habitats was estimated based on reports in the literature. The taxonomic groups treated were those with species commonly found on submerged substrates in aquatic habitats: Ascomycetes (exclusive of yeasts), Basidiomycetes, Chytridiomycetes, and the non-fungal

Chytridiomycota (chytrids) is the only phylum of true Fungi that reproduces with motile spores (zoospores). Chytrids currently are classified into five orders based on habitat, zoospore characters and life cycles. In this paper we estimate the phylogeny of the chytrids with DNA sequences from the ribosomal RNA operon (18S+5.8S+28S subunits). To our surprise the morphologically reduced parasites Olpidium and Rozella comprise two entirely new, and separate, lineages on the fungal tree. Olpidium brassicae groups among the Zygomycota, and Rozella spp. are the earliest branch to diverge in the fungal kingdom. The phylogeny also suggests that Chytridiomycota is not monophyletic and there are four major lineages of chytrids: Rozella spp., Olpidium brassicae, the Blastocladiales and a "core chytrid clade" containing the remaining orders and families and the majority of flagellated fungi. Within the core chytrid group 11 subclades can be identified, each of which correlates well with zoospore ultrastructure or morphology. We provide a synopsis of each clade and its morphological circumscription. The Blastocladiales appears to be the sister taxon of most nonflagellated fungi. Based on molecular phylogenetic and ultrastructural characters this order is elevated to a phylum, the Blastocladiomycota.

A formalin-inactivated respiratory syncytial virus vaccine was used to immunize infants in the mid1960s ; when these children later were naturally infected by the virus they developed markedly accentuated disease, and two died. For the present work, a new batch of vaccine was prepared using the original formula. Administration of either the old or new vaccines resulted in enhanced lesions in immunized cotton rats subsequently challenged with live virus, although administration of the vaccine reduced virus replication by 90 %. Animals primed with formalin-inactivated virus and challenged developed markedly accentuated lesions of the same type as in animals undergoing primary or secondary infection. In addition, the animals with the vaccine-enhanced disease developed alveolitis and interstitial pneumonitis, which appear to be specific markers for the vaccine enhancement. The newly prepared vaccine appears suitable as a reference standard for studying the mechanism of vaccine-enhanced disease caused by this virus. Additionally, we reviewed the lesions in the lungs of the two humans who died with the vaccine-enhanced disease in 1967, and found that they were similar to, but more severe than those seen in the cotton rats.

Amphibian populations at the Savannah River Site (SRS), South Carolina, USA, have been censused consistently for 35 years, and this provides a time series to examine the causes of population fluctuations. We examined archived museum specimens of 15 anuran species collected at wetlands on the SRS for the presence of the causative agent (Batrachochytrium dendrobatidis) of chytridiomycosis, an emerging disease associated with population declines elsewhere. Infections were present in three out of 137 (2.18%) individuals; the pathogen was detected in two Rana catesbeiana and a single Rana sphenocephala, all collected between 1978 and 1981. Lesions were not consistent with the later stages of fatal chytridiomycosis. Analysis of population trajectories of nine amphibian species over 26 years at SRS showed that four species declined significantly over this period, including R. sphenocephala. However, we demonstrate that these declines are more likely caused by an increase in the number of years with insufficient rainfall and a shortened hydroperiod at the breeding site than by chytrid epidemics. This pattern appears to be linked to a drying trend at SRS through the 1990s, although it is unclear whether this was caused by climate change. This study demonstrates that the presence of B. dendrobatidis in amphibian communities where some species are declining does not always implicate chytrids as a cause of the decline. Like many other emerging pathogens, the outcome of infection can vary among individuals and populations, depending on life history traits, environmental conditions, and virulence factors of the pathogen. Our report also demonstrates the usefulness of archived museum specimens and long‐term population monitoring in studying the host–parasite ecology of emerging diseases.