Scientific interest in the nonmotoric symptoms of Parkinson's disease (PD) has increased dramatically, and psychiatric symptoms (e.g., cognitive impairment, anxiety and mood disorders) are now considered prime targets for treatment optimization. Psychiatric complications in PD are quite common, affecting as many as 60 to 80% of patients. This study describes the case of a 74 yearold male with PD who presented with complaints of anxiety and trouble with memory and attention. A combined cognitive behavior therapy and cognitive enhancement intervention was delivered in ten 90-to-120 minute sessions. The patient showed a reduction in anxiety symptoms that was of sufficient magnitude to meet criteria for 'responder' status. His cognitive skills were mostly unchanged, despite the rigorous rehabilitation practice. Implications for treatment and strategies for enhancing therapeutic benefits are discussed.
Intra-tumor heterogeneity (ITH) is a key challenge in cancer treatment, but previous studies have focused mainly on the genomic alterations without exploring phenotypic (transcriptomic and immune) heterogeneity. Using one of the largest prospective surgical cohorts for Hepatocellular Carcinoma (HCC) with multi-region sampling, we sequenced whole genomes and paired transcriptomes from 67 HCC patients (331 samples). We found that while genomic ITH was rather constant across TNM stages, phenotypic ITH had a very different trajectory and quickly diversified in stage II patients. Most strikingly, 30% patients were found to contain more than one transcriptomic subtype within a single tumor. Such phenotypic ITH was found to be much more informative in predicting patient survival than genomic ITH and explains the poor efficacy of single-target systemic therapies in HCC. Taken together, we not only revealed an unprecedentedly dynamic landscape of phenotypic heterogeneity in HCC, but also highlighted the importance of studying phenotypic evolution across cancer types.
Background
This study aims to determine the predictors of acquired
exon 20 T790M
mutation in advanced non-small cell lung cancer (NSCLC) patients harbouring sensitizing
epidermal growth factor receptor
(
EGFR)
mutation following the failure of first- or second-generation
EGFR
-tyrosine kinase inhibitor (TKI).
Methods
This is a retrospective observational study of NSCLC patients with sensitising
EGFR
mutation experiencing disease progression (PD) whilst on first- or second-generation
EGFR
-TKIs with subsequent investigations to detect acquired
T790M
mutation at the University of Malaya Medical Centre from 1st January 2015 to 31st December 2017.
Results
A total of 87 patients were included. Upon PD, acquired
T790M
mutation was found in 55 (63.2%) patients and was significantly more common in patients who achieved partial response (PR) whilst on the
EGFR-
TKIs (p = 0.008) or had new lung metastasis upon PD (p = 0.048). It was less frequent in patients who developed new symptomatic brain lesions (p = 0.021). Patients with
exon 19
deletion were more likely to acquire
T790M
mutation compared to those with
exon 21 L858R
point mutation (p = 0.077). Multivariate analysis revealed PR whilst on
EGFR
-TKI treatment was an independent predictor of acquiring
T790M
mutation (p = 0.021), whereas development of new symptomatic brain lesions (p = 0.034) or new lymph node metastases (p = 0.038) upon PD was independently against acquiring
T790M
mutation. Patients with
exon 19
deletion were more likely to acquire
T790M
mutation compared to those with
exon 21 L858R
point mutation (odds ratio: 2.3, 95% confidence interval: 0.84–6.25, p = 0.104).
Conclusion
The best tumour response of PR to first- or second-generation
EGFR
-TKI treatment independently predicts acquired
T790M
mutation. Patients with
exon 19
deletion are likely to acquire
T790M
mutation. This would prove useful for clinicians to prognosticate and plan subsequent treatments for patients with advanced NSCLC harbouring
EGFR
mutations.
Background
Conventional differential expression (DE) testing compares the grouped mean value of tumour samples to the grouped mean value of the normal samples, and may miss out dysregulated genes in small subgroup of patients. This is especially so for highly heterogeneous cancer like Hepatocellular Carcinoma (HCC).
Methods
Using multi-region sampled RNA-seq data of 90 patients, we performed patient-specific differential expression testing, together with the patients’ matched adjacent normal samples.
Results
Comparing the results from conventional DE analysis and patient-specific DE analyses, we show that the conventional DE analysis omits some genes due to high inter-individual variability present in both tumour and normal tissues. Dysregulated genes shared in small subgroup of patients were useful in stratifying patients, and presented differential prognosis. We also showed that the target genes of some of the current targeted agents used in HCC exhibited highly individualistic dysregulation pattern, which may explain the poor response rate.
Discussion/conclusion
Our results highlight the importance of identifying patient-specific DE genes, with its potential to provide clinically valuable insights into patient subgroups for applications in precision medicine.
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