Antibiotic resistance is a threat to human and animal health worldwide, and key measures are required to reduce the risks posed by antibiotic resistance genes that occur in the environment. These measures include the identification of critical points of control, the development of reliable surveillance and risk assessment procedures, and the implementation of technological solutions that can prevent environmental contamination with antibiotic resistant bacteria and genes. In this Opinion article, we discuss the main knowledge gaps, the future research needs and the policy and management options that should be prioritized to tackle antibiotic resistance in the environment.

The impact of additions (1-5% by weight) of a nutrient-poor, wood-derived biochar on pepper (Capsicum annuum L.) and tomato (Lycopersicum esculentum Mill.) plant development and productivity in a coconut fiber:tuff growing mix under optimal fertigation conditions was examined. Pepper plant development in the biochar-treated pots was significantly enhanced as compared with the unamended controls. This was reflected by a system-wide increase in most measured plant parameters: leaf area, canopy dry weight, number of nodes, and yields of buds, flowers and fruit. In addition to the observed increases in plant growth and productivity, the rhizosphere of biochar-amended pepper plants had significantly greater abundances of culturable microbes belonging to prominent soil-associated groups. Phylogenetic characterization of unique bacterial isolates based on 16S rRNA gene analysis demonstrated that of the 20 unique identified isolates from roots and bulk soil from the char-amended growing mix, 16 were affiliated with previously described plant growth promoting and/or biocontrol agents. In tomato, biochar treatments positively enhanced plant height and leaf size, but had no effect on flower and fruit yield. The positive impacts of biochar on plant response were not due to direct or indirect effects on plant nutrition, as there were no differences between control and treatments in leaf nutrient content. Nor did biochar affect the field capacity of the soilless mixture. A number of organic compounds belonging to various chemical classes, including n-alkanoic acids, hydroxy and acetoxy acids, benzoic acids, diols, triols, and phenols were identified in organic solvent extracts of the biochar. We conjecture two related alternatives to explain the improved plant performance under biochar treatment: (i) the biochar stimulated shifts in microbial populations towards beneficial plant growth promoting rhizobacteria or fungi, due to either chemical or physical attributes of the biochar; or (ii) low doses of biochar chemicals, many of which are phytotoxic or biocidal at high concentrations, stimulated plant growth at low doses (hormesis).

Leguminous plants (such as peas and soybeans) and rhizobial soil bacteria are symbiotic partners that communicate through molecular signaling pathways, resulting in the formation of nodules on legume roots and occasionally stems that house nitrogen-fixing bacteria. Nodule formation has been assumed to be exclusively initiated by the binding of bacterial, host-specific lipochito-oligosaccharidic Nod factors, encoded by the nodABC genes, to kinase-like receptors of the plant. Here we show by complete genome sequencing of two symbiotic, photosynthetic, Bradyrhizobium strains, BTAi1 and ORS278, that canonical nodABC genes and typical lipochito-oligosaccharidic Nod factors are not required for symbiosis in some legumes. Mutational analyses indicated that these unique rhizobia use an alternative pathway to initiate symbioses, where a purine derivative may play a key role in triggering nodule formation.