The EPPO Secretariat has developed computer software for Pest Risk Analysis (PRA) within the EC 7th Framework Programme PRATIQUE (Enhancements of Pest Risk Analysis Techniques) and with the support of the EPPO Panels. The software, Computer Assisted PRA (CAPRA), aims to assist pest risk analysts to run the EPPO Decision‐support scheme for pest risk analysis [EPPO Standard PM 5/3(5) Decision‐support scheme for quarantine pests], and other decision‐support schemes. It is freely avaliable on the EPPO website or on http://capra.eppo.org/.

High‐throughput sequencing (HTS) technologies have revolutionized plant pest research and are now raising interest for plant pest diagnostics, with plant virus diagnostics at the forefront of development. However, the application of HTS in plant pest diagnostics raises important challenges that plant health regulators will have to address. Adapted infrastructures, technical guidelines and training are pivotal for further use and adoption of the HTS technologies in the phytosanitary framework.

PRATIQUE is an EC-funded 7th Framework research project designed to address the major challenges for pest risk analysis (PRA) in Europe. It has three principal objectives: (a) to assemble the datasets required to construct PRAs valid for the whole of the EU, (b) to conduct multidisciplinary research that enhances the techniques used in PRA and (c) to provide a decision support scheme for PRA that is efficient and user-friendly. The research will be undertaken by scientists from 13 institutes in the EU and one each from Australia and New Zealand with subcontractors from institutes in China and Russia. They will produce a structured inventory of PRA datasets for the EU and undertake targeted research to improve existing procedures and develop new methods for (a) the assessment of economic, environmental and social impacts, (b) summarising risk while taking account of uncertainty, (c) mapping endangered areas (d) pathway risk analysis and systems approaches and (e) guiding actions during emergencies caused by outbreaks of harmful organisms. The results will be tested and provided as protocols, decision support systems and computer programs with examples of best practice linked to a computerised European and Mediterranean Plant Protection Organization (EPPO) PRA scheme.

Assessing the potential environmental impact of alien plants and plant pests is notoriously difficult. New protocols have been developed in the framework of the EC project PRATIQUE to provide guidance on environmental impact assessment in the EPPO pest risk analysis (PRA) decisionsupport scheme and enhance consistency between risk assessors and risk ratings for different pests. A set of questions with rating guidance and examples is provided, and individual scores are summarized into final scores, using a hierarchy of risk matrices, to assess current and potential environmental impacts. Two separate protocols are available: for alien plants and for other pests. These protocols could also be used to assess environmental impact in other PRA schemes as well as to assign alien species to regional black lists or to prioritize species for management decisions.

High-throughput sequencing (HTS) is a powerful tool that enables the simultaneous detection and potential identification of any organisms present in a sample. The growing interest in the application of HTS technologies for routine diagnostics in plant health laboratories is triggering the development of guidelines on how to prepare laboratories for performing HTS testing. This paper describes general and technical recommendations to guide laboratories through the complex process of