Anterior gradient 2 (
AGR
2) is a dimeric protein disulfide isomerase family member involved in the regulation of protein quality control in the endoplasmic reticulum (
ER
). Mouse
AGR
2 deletion increases intestinal inflammation and promotes the development of inflammatory bowel disease (
IBD
). Although these biological effects are well established, the underlying molecular mechanisms of
AGR
2 function toward inflammation remain poorly defined. Here, using a protein–protein interaction screen to identify cellular regulators of
AGR
2 dimerization, we unveiled specific enhancers, including
TMED
2, and inhibitors of
AGR
2 dimerization, that control
AGR
2 functions. We demonstrate that modulation of
AGR
2 dimer formation, whether enhancing or inhibiting the process, yields pro‐inflammatory phenotypes, through either autophagy‐dependent processes or secretion of
AGR
2, respectively. We also demonstrate that in
IBD
and specifically in Crohn's disease, the levels of
AGR
2 dimerization modulators are selectively deregulated, and this correlates with severity of disease. Our study demonstrates that
AGR
2 dimers act as sensors of
ER
homeostasis which are disrupted upon
ER
stress and promote the secretion of
AGR
2 monomers. The latter might represent systemic alarm signals for pro‐inflammatory responses.
Summary
Chromatin is a barrier to efficient DNA repair, as it hinders access and processing of certain DNA lesions. ALC1/CHD1L is a nucleosome-remodeling enzyme that responds to DNA damage, but its precise function in DNA repair remains unknown. Here we report that loss of ALC1 confers sensitivity to PARP inhibitors, methyl-methanesulfonate, and uracil misincorporation, which reflects the need to remodel nucleosomes following base excision by DNA glycosylases but prior to handover to APEX1. Using CRISPR screens, we establish that ALC1 loss is synthetic lethal with homologous recombination deficiency (HRD), which we attribute to chromosome instability caused by unrepaired DNA gaps at replication forks. In the absence of ALC1 or APEX1, incomplete processing of BER intermediates results in post-replicative DNA gaps and a critical dependence on HR for repair. Hence, targeting ALC1 alone or as a PARP inhibitor sensitizer could be employed to augment existing therapeutic strategies for HRD cancers.
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