We investigated the genetic, phenotypic, and interferon status of 46
patients from 37 families with neurological disease due to mutations in
ADAR1. The clinicoradiological phenotype encompassed a
spectrum of Aicardi–Goutières syndrome, isolated bilateral
striatal necrosis, spastic paraparesis with normal neuroimaging, a progressive
spastic dystonic motor disorder, and adult-onset psychological difficulties with
intracranial calcification. Homozygous missense mutations were recorded in five
families. We observed a p.Pro193Ala variant in the heterozygous state in 22 of
23 families with compound heterozygous mutations. We also ascertained 11 cases
from nine families with a p.Gly1007Arg dominant-negative mutation, which
occurred de novo in four patients, and was inherited in three families in
association with marked phenotypic variability. In 50 of 52 samples from 34
patients, we identified a marked upregulation of type I interferon-stimulated
gene transcripts in peripheral blood, with a median interferon score of 16.99
(interquartile range [IQR]: 10.64–25.71) compared with
controls (median: 0.93, IQR: 0.57–1.30). Thus, mutations in
ADAR1 are associated with a variety of clinically distinct
neurological phenotypes presenting from early infancy to adulthood, inherited
either as an autosomal recessive or dominant trait. Testing for an interferon
signature in blood represents a useful biomarker in this context.
ADP-ribosylation, the addition of poly-ADP ribose (PAR) onto proteins, is a response signal to cellular challenges, such as excitotoxicity or oxidative stress. This process is catalyzed by a group of enzymes referred to as poly(ADP-ribose) polymerases (PARPs). Because the accumulation of proteins with this modification results in cell death, its negative regulation restores cellular homeostasis: a process mediated by poly-ADP ribose glycohydrolases (PARGs) and ADP-ribosylhydrolase proteins (ARHs). Using linkage analysis and exome or genome sequencing, we identified recessive inactivating mutations in ADPRHL2 in six families. Affected individuals exhibited a pediatric-onset neurodegenerative disorder with progressive brain atrophy, developmental regression, and seizures in association with periods of stress, such as infections. Loss of the Drosophila paralog Parg showed lethality in response to oxidative challenge that was rescued by human ADPRHL2, suggesting functional conservation. Pharmacological inhibition of PARP also rescued the phenotype, suggesting the possibility of postnatal treatment for this genetic condition.
Purpose
Pathogenic autosomal recessive variants in CAD, encoding the multienzymatic protein initiating pyrimidine de novo biosynthesis, cause a severe inborn metabolic disorder treatable with a dietary supplement of uridine. This condition is difficult to diagnose given the large size of CAD with over 1000 missense variants and the nonspecific clinical presentation. We aimed to develop a reliable and discerning assay to assess the pathogenicity of CAD variants and to select affected individuals that might benefit from uridine therapy.
Methods
Using CRISPR/Cas9, we generated a human CAD-knockout cell line that requires uridine supplements for survival. Transient transfection of the knockout cells with recombinant CAD restores growth in absence of uridine. This system determines missense variants that inactivate CAD and do not rescue the growth phenotype.
Results
We identified 25 individuals with biallelic variants in CAD and a phenotype consistent with a CAD deficit. We used the CAD-knockout complementation assay to test a total of 34 variants, identifying 16 as deleterious for CAD activity. Combination of these pathogenic variants confirmed 11 subjects with a CAD deficit, for whom we describe the clinical phenotype.
Conclusions
We designed a cell-based assay to test the pathogenicity of CAD variants, identifying 11 CAD-deficient individuals who could benefit from uridine therapy.
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