No abstract

Archipelagoes serve as important ‘natural laboratories’ which facilitate the study of island radiations and contribute to the understanding of evolutionary processes. The white-eye genus Zosterops is a classical example of a ‘great speciator’, comprising c. 100 species from across the Old World, most of them insular. We achieved an extensive geographic DNA sampling of Zosterops by using historical specimens and recently collected samples. Using over 700 genome-wide loci in conjunction with coalescent species tree methods and gene flow detection approaches, we untangled the reticulated evolutionary history of Zosterops, which comprises three main clades centered in Indo-Africa, Asia, and Australasia, respectively. Genetic introgression between species permeates the Zosterops phylogeny, regardless of how distantly related species are. Crucially, we identified the Indonesian archipelago, and specifically Borneo, as the major center of diversity and the only area where all three main clades overlap, attesting to the evolutionary importance of this region.

Aim  We use parametric biogeographical reconstruction based on an extensive DNA sequence dataset to characterize the spatio‐temporal pattern of colonization of the Old World monarch flycatchers (Monarchidae). We then use this framework to examine the role of dispersal and colonization in their evolutionary diversification and to compare plumages between island and continental Terpsiphone species. Location  Africa, Asia and the Indian Ocean. Methods  We generate a DNA sequence dataset of 2300 bp comprising one nuclear and three mitochondrial markers for 89% (17/19) of the Old World Monarchidae species and 70% of the Terpsiphone subspecies. By applying maximum likelihood and Bayesian phylogenetic methods and implementing a Bayesian molecular clock to provide a temporal framework, we reveal the evolutionary history of the group. Furthermore, we employ both Lagrange and Bayes‐Lagrange analyses to assess ancestral areas at each node of the phylogeny. By combining the ancestral area reconstruction with information on plumage traits we are able to compare patterns of plumage evolution on islands and continents. Results  We provide the first comprehensive molecular phylogenetic reconstruction for the Old World Monarchidae. Our phylogenetic results reveal a relatively recent diversification associated with several dispersal events within this group. Moreover, ancestral area analyses reveal an Asian origin of the Indian Ocean and African clades. Ancestral state reconstruction analyses of plumage characters provide an interpretation of the plumage differentiation on islands and continents. Ancestral plumage traits are inferred to be close to those of the Asian paradise‐flycatcher (Terpsiphone paradisi), and island species display a high degree of plumage autapomorphy compared with continental species. Main conclusions  Terpsiphone paradisi is polyphyletic and comprises populations that have retained the ancestral plumage of the widespread Terpsiphone genus. The genus appears to have colonized south‐west Asia, the Indian Ocean and Africa from eastern Asia. The phylogeny and divergence time estimates indicate multiple simultaneous colonizations of the western Old World by Terpsiphone. These results reinforce a hypothesis of range expansions of a Terpsiphone paradisi‐like ancestor into eastern Asia and the western Old World.

Biodiversity knowledge is widely heterogeneous across the Earth's biomes. Some areas, due to their remoteness and difficult access, present large taxonomic knowledge gaps. Mostly located in the tropics, these areas have frequently experienced a fast development of anthropogenic activities during the last decades and are therefore of high conservation concerns. The biodiversity hotspots of Southeast Asia exemplify the stakes faced by tropical countries. While the hotspots of Sundaland (Java, Sumatra, Borneo) and Wallacea (Sulawesi, Moluccas) have long attracted the

Peat swamp forest is an important refuge for biodiversity in Southeast Asia and is now becoming a target of exploitation. The scarcity of information on avifauna and ecology of birds in peat swamp forests prevents understanding of the effects of land use change on avifauna. In this study, we describe the bird assemblages in habitats with different land uses by comparing species richness, community composition, and feeding guild patterns in Bukit Batu, Indonesia. Bird assemblages in natural peat swamp forests (NPF), high‐maintenance industrial acacia plantations (planted acacia forest, PAF), low‐maintenance rubber plantations (jungle rubber forest, JRF), and village areas (VIL) were studied using a fixed‐radius point‐count method. Of the 95 species observed, 45, 20, 35, and 48 species were observed in NPF, PAF, JRF, and VIL, respectively. Estimated species richness was the highest in NPF, followed by VIL, JRF, and PAF. NPF had the highest species diversity and β‐diversity, more endangered species, and a distinctive species composition characterized by fly‐catching insectivores. The relative conservation value of PAF was notably low, particularly compared with JRF. The avifauna in VIL was characterized by more generalists that favor open spaces and therefore is not considered an important habitat for forest‐dependent birds that are of conservation concern. Our results indicate that NPF has irreplaceable value for bird diversity conservation, but low‐maintenance rubber plantations were home to several forest‐dependent species and partially supported bird diversity, particularly compared with high‐maintenance acacia plantations.