Estuaries are known to be strong source for atmospheric CO2, however, little information is available from Indian estuaries. In order to quantify CO2 emissions from the Indian estuaries, samples were collected at 27 estuaries all along the Indian coast during discharge (wet) period. The emissions of CO2 to the atmosphere from Indian estuaries were 4–5 times higher during wet than dry period. The pCO2 ranged between ∼300 and 18492 μatm which are within the range of world estuaries. The mean pCO2 and particulate organic carbon (POC) showed positive relation with rate of discharge suggesting availability of high quantities of organic matter that led to enhanced microbial decomposition. The annual CO2 fluxes from the Indian estuaries, together with dry period data available in the literature, amounts to 1.92 TgC which is >10 times less than that from the European estuaries. The low CO2 fluxes from the Indian estuaries are attributed to low flushing rates and less human settlements along the banks of the Indian estuaries.

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Estuaries have been under sampled to establish them as sources or sinks of the atmospheric carbon dioxide. Such poor coverage is well known for tropical, particularly monsoon driven, estuaries. In an attempt to study the variability in CO2 in a tropical monsoon estuary we made systematic time‐series observations in the Gautami Godavari estuarine system in the east coast of India. Our 18 month‐long extensive monitoring in the tropical Godavari estuarine system revealed pH >7.8 during dry period that decreased by 1.5 ± 0.01 during peak discharge period. The decrease in pH was associated with high nutrients and bacterial activities suggesting significant organic carbon decomposition. High bacterial respiration (20.6 ± 7.2 μMC l−1 d−1) in the estuary resulted in very high pCO2 of ∼30,000 μatm during peak discharge period, which otherwise were <500 μatm during dry period. Such high pCO2 levels were unknown to occur in any aquatic region. Several major and minor estuaries flow into the northern Indian Ocean from the Indian subcontinent and the monsoon associated processes make these systems chimney for emitting CO2 to atmosphere unrealized hitherto.

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