Double‐stranded RNA‐dependent protein kinase (PKR) has been implicated in interferon (IFN) induction, antiviral response and tumor suppression. We have generated mice devoid of functional PKR (Pkr%). Although the mice are physically normal and the induction of type I IFN genes by poly(I).poly(C) (pIC) and virus is unimpaired, the antiviral response induced by IFN‐gamma and pIC was diminished. However, in embryo fibroblasts from Pkr knockout mice, the induction of type I IFN as well as the activation of NF‐kappa B by pIC, were strongly impaired but restored by priming with IFN. Thus, PKR is not directly essential for responses to pIC, and a pIC‐responsive system independent of PKR is induced by IFN. No evidence of the tumor suppressor activity of PKR was demonstrated.
Colorectal carcinoma represents a heterogeneous entity, with only a fraction of the tumours responding to available therapies, requiring a better molecular understanding of the disease in precision oncology. To address this challenge, the OncoTrack consortium recruited 106 CRC patients (stages I–IV) and developed a pre-clinical platform generating a compendium of drug sensitivity data totalling >4,000 assays testing 16 clinical drugs on patient-derived in vivo and in vitro models. This large biobank of 106 tumours, 35 organoids and 59 xenografts, with extensive omics data comparing donor tumours and derived models provides a resource for advancing our understanding of CRC. Models recapitulate many of the genetic and transcriptomic features of the donors, but defined less complex molecular sub-groups because of the loss of human stroma. Linking molecular profiles with drug sensitivity patterns identifies novel biomarkers, including a signature outperforming RAS/RAF mutations in predicting sensitivity to the EGFR inhibitor cetuximab.
Sequence similarity between aB-crystallin and small heat shock proteins (HSPs) has prompted us to investigate whether aB-crystallin expression is induced by heat shock. Indeed, accumulation of aB-crystallin was detected immunologically in NIH 3T3 cells after incubation at elevated temperatures and after addition of Cd2+ or sodium arsenite to these cells. Two-dimensional gel electrophoresis revealed identity between aB-crystallin from eye lenses and from heattreated fibroblasts. The promoter of the aB-crystallin gene was fused to the bacterial chloramphenicol acetyltransferase gene and was shown to confer heat inducibility on this reporter gene in transient transfection assays. A perfect heat shock element within the promoter region is likely to mediate this response. Small HSPs and aB-crystallin were shown to share the following two physical properties: (i) they form supramolecular structures with sedimentation values around 17 S and (ii) they are associated with the nucleus at high temperatures and are localized in the cytoplasm under normal conditions. We conclude that aB-crystallin has to be considered a member of the class of small HSPs.Heat shock and numerous other stress conditions lead to the rapid induction of several genes whose protein products are collectively called heat shock proteins (HSPs) (for recent reviews see refs. 1-3). The HSPs have been grouped into several classes on the basis of their size and sequence homology. Members of the class of small HSPs have molecular masses in the range 15-40 kDa. All analyzed organisms possess at least one small HSP gene. In mammals, birds, and yeast this class of HSPs is represented by a single member (4-9), whereas in Drosophila melanogaster and plants there appear to be multiple small HSPs (10, 11). Small HSPs aggregate to form characteristic ring-shaped structures called heat shock granules (4,(12)(13)(14)(15). These structures resemble prosomes or proteosomes but are distinct entities (16). Their biochemical function is unknown. Under heat shock conditions the small HSPs associate with the nucleus. Following a heat shock they slowly relocalize to the cytoplasm (17)(18)(19). It is still a matter of debate whether the small HSPs are actually transported into the nucleus at high temperatures or whether they are entrapped by the intermediate filaments, which, under heat shock conditions, collapse onto the nucleus (for a review see ref.3). The amino acid sequences of the small HSPs from different organisms are only poorly conserved. However, striking sequence similarities exist between vertebrate a-crystallins and small HSPs (5, 20-23). a-Crystallins were originally found in eye lenses, where they are among the most abundant proteins (24, 25). There exist two forms of a-crystallins, aA and aB, which are closely related (26). Considerable amounts of aB-crystallin, but not aAcrystallin, are present in many nonlenticular tissues (27-31). Moreover, aB-crystallin gene expression has been observed in various diseased cells, including astrocytes of patients s...
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