No abstract

Ecological and genetic studies of marine turtles generally support the hypothesis of natal homing, but leave open the question of the geographical scale of genetic exchange and the capacity of turtles to shift breeding sites. Here we combine analyses of mitochondrial DNA (mtDNA) variation and recapture data to assess the geographical scale of individual breeding populations and the distribution of such populations through Australasia. We conducted multiscale assessments of mtDNA variation among 714 samples from 27 green turtle rookeries and of adult female dispersal among nesting sites in eastern Australia. Many of these rookeries are on shelves that were flooded by rising sea levels less than 10 000 years (c. 450 generations) ago. Analyses of sequence variation among the mtDNA control region revealed 25 haplotypes, and their frequency distributions indicated 17 genetically distinct breeding stocks (Management Units) consisting either of individual rookeries or groups of rookeries in general that are separated by more than 500 km. The population structure inferred from mtDNA was consistent with the scale of movements observed in long-term mark-recapture studies of east Australian rookeries. Phylogenetic analysis of the haplotypes revealed five clades with significant partitioning of sequence diversity (Phi = 68.4) between Pacific Ocean and Southeast Asian/Indian Ocean rookeries. Isolation by distance was indicated for rookeries separated by up to 2000 km but explained only 12% of the genetic structure. The emerging general picture is one of dynamic population structure influenced by the capacity of females to relocate among proximal breeding sites, although this may be conditional on large population sizes as existed historically across this region.

Strip-transect aerial surveys of Shark Bay, Ningaloo Reef and Exmouth Gulf were conducted during the winters of 1989 and 1994. These surveys were designed primarily to estimate the abundance and distribution of dugongs, although they also allowed sea turtles and dolphins, and, to a lesser extent, whales, manta rays and whale sharks to be surveyed. Shark Bay contains a large population of dugongs that is of international significance. Estimates of approximately 10000 dugongs resulted from both surveys. The density of dugongs is the highest recorded in Australia and the Middle East, where these surveys have been conducted. Exmouth Gulf and Ningaloo Reef are also important dugong habitats, each supporting in the order of 1000 dugongs. The estimated number of turtles in Shark Bay is comparable to the number in Exmouth Gulf plus Ningaloo Reef (7000–9000). The density of turtles in Ningaloo Reef and, to a lesser extent, Exmouth Gulf is exceptionally high compared with most other areas that have been surveyed by the same technique. Shark Bay supports a substantial population of bottlenose dolphins (2000–3000 minimum estimate). Exmouth Gulf and Ningaloo Reef were not significant habitats for dolphins during the winter surveys. Substantial numbers of whales (primarily humpbacks) and manta rays occur in northern and western Shark Bay in winter. Ningaloo Reef is an important area for whale sharks and manta rays in autumn and winter. The Shark Bay Marine Park excludes much of the winter habitats of the large vertebrate fauna of Shark Bay. In 1989 and 1994, more than half of all the dugongs were seen outside the Marine Park (57·4 and 50·7%, respectively). Approximately one-third to one-half of turtles and dolphins were seen outside the Marine Park (in 1989 and 1994 respectively: turtles, 43 and 27%; dolphins, 47 and 32%). Almost all the whales and most of the manta rays were seen outside the Marine Park. Expansion of the Shark Bay Marine Park, to bring it into alignment with the marine section of the Shark Bay World Heritage Area, would facilitate the appropriate management of these populations. This would also simplify the State– Commonwealth collaboration necessary to meet the obligations of World Heritage listing. The coastal waters of Western Australia north of the surveyed area (over 6000 km of coastline) are relatively poorly known and surveys of their marine megafauna are required for wise planning and management.

Hawksbill turtle (Eretmochelys imbricata) populations have experienced global decline because of a history of intense commercial exploitation for shell and stuffed taxidermied whole animals, and harvest for eggs and meat. Improved understanding of genetic diversity and phylogeography is needed to aid conservation. In this study, we analyzed the most geographically comprehensive sample of hawksbill turtles from the Indo-Pacific Ocean, sequencing 766 bp of the mitochondrial control region from 13 locations (plus Aldabra, n = 4) spanning over 13500 km. Our analysis of 492 samples revealed 52 haplotypes distributed in 5 divergent clades. Diversification times differed between the Indo-Pacific and Atlantic lineages and appear to be related to the sea-level changes that occurred during the Last Glacial Maximum. We found signals of demographic expansion only for turtles from the Persian Gulf region, which can be tied to a more recent colonization event. Our analyses revealed evidence of transoceanic migration, including connections between feeding grounds from the Atlantic Ocean and Indo-Pacific rookeries. Hawksbill turtles appear to have a complex pattern of phylogeography, showing a weak isolation by distance and evidence of multiple colonization events. Our novel dataset will allow mixed-stock analyses of hawksbill turtle feeding grounds in the Indo-Pacific by providing baseline data needed for conservation efforts in the region. Eight management units are proposed in our study for the Indo-Pacific region that can be incorporated in conservation plans of this critically endangered species.