SummaryA large number of metabolites are found in each plant, most of which have not yet been identified. Development of a methodology is required to deal systematically with unknown metabolites, and to elucidate their biological roles in an integrated 'omics' framework. Here we report the development of a 'metabolite annotation' procedure. The metabolite annotation is a process by which structures and functions are inferred for metabolites. Tomato (Solanum lycopersicum cv. Micro-Tom) was used as a model for this study using LC-FTICR-MS. Collected mass spectral features, together with predicted molecular formulae and putative structures, were provided as metabolite annotations for 869 metabolites. Comparison with public databases suggests that 494 metabolites are novel. A grading system was introduced to describe the evidence supporting the annotations. Based on the comprehensive characterization of tomato fruit metabolites, we identified chemical building blocks that are frequently found in tomato fruit tissues, and predicted novel metabolic pathways for flavonoids and glycoalkaloids. These results demonstrate that metabolite annotation facilitates the systematic analysis of unknown metabolites and biological interpretation of their relationships, which provide a basis for integrating metabolite information into the system-level study of plant biology.

The effectiveness and safety of yokukansan (TJ-54), a traditional Japanese medicine (kampo) for the treatment of the behavioural and psychological symptoms of dementia (BPSD), were evaluated in 106 patients diagnosed as having Alzheimer's disease (AD) (including mixed-type dementia) or dementia with Lewy bodies. Patients were randomly assigned to group A (TJ-54 treatment in period I and no treatment in period II; each period lasting 4 wk) or group B (no treatment in period I and TJ-54 treatment in period II). BPSD and cognitive functions were evaluated using the Neuropsychiatric Inventory (NPI) and the Mini-Mental State Examination (MMSE), respectively. Activities of daily living (ADL) were evaluated using Instrumental Activities of Daily Living (IADL) in outpatients and the Barthel Index in in-patients. For the safety evaluation, adverse events were investigated. Significant improvements in mean total NPI score associated with TJ-54 treatment were observed in both periods (Wilcoxon test, p=0.040 in period I and p=0.048 in period II). The mean NPI scores significantly improved during TJ-54 treatment in groups A and B (p=0.002 and p=0.007, respectively) but not during periods of no treatment. Among the NPI subscales, significant improvements were observed in delusions, hallucinations, agitation/aggression, depression, anxiety, and irritability/lability. The effects of TJ-54 persisted for 1 month without any psychological withdrawal symptoms in group A. TJ-54 did not show any effect on either cognitive function or ADL. No serious adverse reactions were observed. The present study suggests that TJ-54 is an effective and well-tolerated treatment for patients with BPSD.

BackgroundThe Solanaceae family includes several economically important vegetable crops. The tomato (Solanum lycopersicum) is regarded as a model plant of the Solanaceae family. Recently, a number of tomato resources have been developed in parallel with the ongoing tomato genome sequencing project. In particular, a miniature cultivar, Micro-Tom, is regarded as a model system in tomato genomics, and a number of genomics resources in the Micro-Tom-background, such as ESTs and mutagenized lines, have been established by an international alliance.ResultsTo accelerate the progress in tomato genomics, we developed a collection of fully-sequenced 13,227 Micro-Tom full-length cDNAs. By checking redundant sequences, coding sequences, and chimeric sequences, a set of 11,502 non-redundant full-length cDNAs (nrFLcDNAs) was generated. Analysis of untranslated regions demonstrated that tomato has longer 5'- and 3'-untranslated regions than most other plants but rice. Classification of functions of proteins predicted from the coding sequences demonstrated that nrFLcDNAs covered a broad range of functions. A comparison of nrFLcDNAs with genes of sixteen plants facilitated the identification of tomato genes that are not found in other plants, most of which did not have known protein domains. Mapping of the nrFLcDNAs onto currently available tomato genome sequences facilitated prediction of exon-intron structure. Introns of tomato genes were longer than those of Arabidopsis and rice. According to a comparison of exon sequences between the nrFLcDNAs and the tomato genome sequences, the frequency of nucleotide mismatch in exons between Micro-Tom and the genome-sequencing cultivar (Heinz 1706) was estimated to be 0.061%.ConclusionThe collection of Micro-Tom nrFLcDNAs generated in this study will serve as a valuable genomic tool for plant biologists to bridge the gap between basic and applied studies. The nrFLcDNA sequences will help annotation of the tomato whole-genome sequence and aid in tomato functional genomics and molecular breeding. Full-length cDNA sequences and their annotations are provided in the database KaFTom http://www.pgb.kazusa.or.jp/kaftom/ via the website of the National Bioresource Project Tomato http://tomato.nbrp.jp.

Hierarchically organized porous materials can provide multidimensional spatial networks on different length scales with improved characteristics relevant to molecular diffusion. [1] Zeolites that are microporous crystalline materials having pores and channels at molecular dimensions are of great importance for industrial applications. [2] However, the presence of only micropores in zeolite frameworks often limits the molecular diffusion and therefore, restricts the transport of bulky molecules. This problem can be resolved by shortening the effective diffusion path lengths, which has been achieved by miniaturizing zeolite crystals, [3] delaminating or exfoliating layered zeolites, [4] synthesizing zeolite nanosheets, [5] and introducing mesopores into zeolite particles. [6][7][8][9][10][11][12] Among these solutions, the fabrication of hierarchical zeolites with micro-and mesoporosity is of interest because it combines intrinsic micropores with bypass-interconnected mesopores, and therefore, enhances both the micropore accessibility and molecular traffic within zeolite particles. [1, 7b, 12] Hierarchical zeolites have been produced using several techniques, including top-down desilication by alkali postsynthetic treatment [6] and bottom-up directed assembly by hard [7] or soft [8][9][10][11] templates. The hard-template method requires multistep procedures and is therefore unfavorable for large-scale production. Alternatively, the direct introduction of organic mesopore-generating agents (mesoporogens) during zeolite synthesis can create uniform mesopores. The use of such mesoporogens is currently one of the most promising methods for the single-step construction of hierarchical zeolites. Progress has been made using well-designed mesoporogens composed of long hydrophobic chains and hydrophilic zeolitic structure-directing groups to generate zeolites with tunable mesoporosity [9a, 10] and to direct the hierarchical assembly of zeolite nanosheets, yielding mesoporous zeolites with house-of-cards-like structures. [5a, 9c, 11] These hierarchical nanosheets showed excellent catalytic performance in several important reactions because the presence of thin layers with specific crystalline faces facilitates catalysis at the exteriors or pore mouths. [13] Such mesoporogens are probably necessary for the direct, singlestep synthesis of hierarchical zeolites.Herein we report an alternative, mesoporogen-free approach for the construction of hierarchically organized MFI zeolites by sequential intergrowth using a simple organic structure-directing agent (OSDA). The selection of an appropriate OSDA and optimized synthesis conditions that can form plate-like zeolites with enhanced 908 rotational intergrowths seems to be a key to achieving a hierarchical structure with three classes of porosity in one structure: the intrinsic microporosity of the zeolite framework together with mesoporosity existing within the zeolite plates and macroporosity stemming from the complex intergrown structure.Epitaxial and rotational int...

Therefore, oxidative stress is associated with daily and day-to-day glucose variability in patients with T2DM.