The pan-cancer analysis of whole genomes The expansion of whole-genome sequencing studies from individual ICGC and TCGA working groups presented the opportunity to undertake a meta-analysis of genomic features across tumour types. To achieve this, the PCAWG Consortium was established. A Technical Working Group implemented the informatics analyses by aggregating the raw sequencing data from different working groups that studied individual tumour types, aligning the sequences to the human genome and delivering a set of high-quality somatic mutation calls for downstream analysis (Extended Data Fig. 1). Given the recent meta-analysis

Technologies such as batteries, biomaterials, and heterogeneous catalysts have functions that are defined by mixtures of molecular and mesoscale components. As yet, this multi-length scale complexity cannot be fully captured by atomistic simulations, and the design of such materials from first principles is still rare 1-5. Likewise, experimental complexity scales exponentially with the number of variables, restricting most searches to narrow areas of materials space. Robots can assist in experimental searches 6-14 but their widespread adoption in materials research is challenging because of the diversity of sample types, operations, instruments and measurements that is required. Here we use a mobile robot to search for improved photocatalysts for hydrogen production from water 15. The robot operated autonomously over 8 days, performing 688 experiments within a 10-variable experimental space, driven by a batched Bayesian search algorithm 16-18. This autonomous search identified photocatalyst mixtures that were six times more active than the initial formulations, selecting beneficial components and deselecting negative ones. Our strategy uses a dexterous 19,20 free-roaming robot 21-24 , automating the researcher rather than the instruments. This modular approach could be deployed in conventional laboratories for a range of research problems beyond photocatalysis. Leverhulme Research Centre for Functional Materials Design, the Engineering and Physical Sciences Research Council (EPSRC) (EP/N004884/1), the Newton Fund (EP/R003580/1), and CSols Ltd. X.W. and Y.B. thank the China Scholarship Council for a Ph.D. studentship. We thank KUKA Robotics for help with gripper design and initial implementation of the robot. Author contributions. B.B. developed the workflow, developed and implemented the robot positioning approach, wrote the control software, designed the bespoke photocatalysis station, and carried out experiments. P.M.M. and V.V.G. developed the optimiser and its interface to the control software. X.L. advised on the photocatalysis workflow. C.M.A., Y.B. and X.L. synthesized materials. Y.B. performed kinetic photocatalysis experiments. X.W. performed NMR analysis and synthesized materials. B.L. carried out initial scavenger screening. R.C. and N.R. helped to build the bespoke stations in the workflow. B.H. analysed the robustness of the system, assisted with the development of control software, and operated the workflow during some experiments. B.A. helped to supervise the automation work. R.S.S. helped to supervise the photocatalysis work. A.I.C. conceived the idea, set up the five hypotheses with BB, and coordinated the research team. Data was interpreted by all authors and the manuscript was prepared by A.I.

Highlights d Mice are sensitized for SARS-CoV-2 infection by Ad5-hACE2 transduction d Genetically deficient strains can be directly assessed without additional breeding d Mice useful for determining host factors necessary for optimal virus clearance d Useful for assessing efficacy of vaccines and therapies such as convalescent plasma

Like many microalgae, Chlamydomonas reinhardtii forms lipid droplets rich in triacylglycerols when nutrient deprived. To begin studying the mechanisms underlying this process, nitrogen (N) deprivation was used to induce triacylglycerol accumulation and changes in developmental programs such as gametogenesis. Comparative global analysis of transcripts under induced and noninduced conditions was applied as a first approach to studying molecular changes that promote or accompany triacylglycerol accumulation in cells encountering a new nutrient environment. Towards this goal, high-throughput sequencing technology was employed to generate large numbers of expressed sequence tags of eight biologically independent libraries, four for each condition, N replete and N deprived, allowing a statistically sound comparison of expression levels under the two tested conditions. As expected, N deprivation activated a subset of control genes involved in gametogenesis while down-regulating protein biosynthesis. Genes for components of photosynthesis were also down-regulated, with the exception of the PSBS gene. N deprivation led to a marked redirection of metabolism: the primary carbon source, acetate, was no longer converted to cell building blocks by the glyoxylate cycle and gluconeogenesis but funneled directly into fatty acid biosynthesis. Additional fatty acids may be produced by membrane remodeling, a process that is suggested by the changes observed in transcript abundance of putative lipase genes. Inferences on metabolism based on transcriptional analysis are indirect, but biochemical experiments supported some of these deductions. The data provided here represent a rich source for the exploration of the mechanism of oil accumulation in microalgae.

Zifeng Yang). AbstractPurpose: Lianhuaqingwen (LH) as traditional Chinese medicine (TCM) formula has been used to treat influenza and exerted broad-spectrum antiviral effects on a series of influenza viruses and immune regulatory effects [1]. The goal of this study is to demonstrate the antiviral activity of LH against the novel SARS-CoV-2 virus and its potential effect in regulating host immune response. Methods: The antiviral activity of LH against SARS-CoV-2 was assessed in Vero E6 cells using CPE and plaque reduction assay. The effect of LH on virion morphology was visualized under transmission electron microscope. Pro-inflammatory cytokine expression levels upon SARS-CoV-2 infection in Huh-7 cells were measured by real-time quantitative PCR assays. Results: LH significantly inhibited SARS-CoV-2 replication in Vero E6 cells and markedly reduced pro-inflammatory cytokines (TNF-α, IL-6, CCL-2/MCP-1 and CXCL-10/IP-10) production at the mRNA levels. Furthermore, LH treatment resulted in abnormal particle morphology of virion in cells. J o u r n a l P r e -p r o o fConclusions: LH significantly inhibits the SARS-COV-2 replication, affects virus morphology and exerts anti-inflammatory activity in vitro. These findings indicate that LH protects against the virus attack, making its use a novel strategy for controlling the COVID-19 disease.