A divergent and regioselective cyclocondensation reaction of β‐enamino diketones with 2‐aminobenzimidazole is reported. The β‐enamino diketones react with 2‐aminobenzimidazole to form exclusively 1,2‐ or 1,4‐regioisomers of benzo[4,5]imidazo[1,2‐a]pyrimidines, depending on the nature of the EWG group in the diketones: when the diketone has a carboxyethyl group, only the 1,2‐regioisomer was obtained; and when the EWG = CF3, only the 1,4‐regioisomer was isolated. The structure of the obtained products was unambiguously determined by 2D‐NMR experiments and single‐crystal X‐ray analysis.