15 STR loci frequencies in the population from Santa Catarina, Southern Brazil

Ocampos, Maristela; Fernandes, R. Cid; Latorre, Ana Frederica Sutter; Silva, Cláudia Maria Dornelles da; Korndorfer, Fabíola Pozza; Giamarusti, Adriana de Carvalho; Menezes, María Elizabeth

doi:10.1016/j.fsigen.2008.10.010

Cited by 7 publications

(9 citation statements)

References 12 publications

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“… Phylogenetic tree obtained by the WPGMA method, based on the allele frequencies of nine STRs systems detected in Macapá (current study), Belém ( Ribeiro-Rodrigues et al , 2007 ), Alagoas ( Ferreira da Silva et al , 2002 ) Pernambuco ( Dellalibera et al , 2004 ), São Paulo ( São-Bento et al , 2008 ), Santa Catarina ( Ocampos et al , 2009 ), Rio de Janeiro ( Góes et al , 2004 ), Brazil ( Grattapaglia et al , 2001 ), and the Iberian Peninsula (Ribeiro-Rodrigues, 2003, Masters Thesis). …”

Section: Figurementioning

confidence: 99%

“…However, when the ancestry percentages estimated for the population of Macapá are compared with the percentages described in other Brazilian populations, it becomes clear that there is a regional variation regarding the dynamics of crossbreeding in Brazil. Thus, by comparing the results obtained in the population of Macapá with those of populations of different geopolitical regions of Brazil ( Grattapaglia et al , 2001 ; Ferreira da Silva et al , 2002 ; Dellalibera et al , 2004 ; Góes et al , 2004 ; Ribeiro-Rodrigues et al , 2007 ; São-Bento et al , 2008 ; Ocampos et al , 2009 Ribeiro-Rodrigues et al , 2007 ; as well as Godinho NMO, 2008, Tese de Doutorado, Curso de Ciências Biológicas da Universidade de Brasília, DF) and with populations of the Iberian Peninsula ( Ribeiro-Rodrigues EM, 2003 , Dissertação de Mestrado, Curso de Genética Molecular, Universidade Federal do Pará, Belém) ( Table 2 and Figure 1 ), the population of Macapá showed to be closer, in terms of genetic distances, to the population of Belém (F ST = 0.0016), in strict accordance with their geographic location and history of colonization. The Iberian Peninsula (F ST = 0.0036) is clearly the most distinct population, as well as the one of São Paulo (F ST = 0.0029).…”

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confidence: 99%

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Allelic frequencies and statistical data obtained from 12 codis STR loci in an admixed population of the Brazilian Amazon

Francez

Rodrigues

Frazão³

et al. 2011

Genet. Mol. Biol.

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The allelic frequencies of 12 short tandem repeat loci were obtained from a sample of 307 unrelated individuals living in Macapá, a city in the northern Amazon region, Brazil. These loci are the most commonly used in forensics and paternity testing. Based on the allele frequency obtained for the population of Macapá, we estimated an interethnic admixture for the three parental groups (European, Native American and African) of, respectively, 46%, 35% and 19%. Comparing these allele frequencies with those of other Brazilian populations and of the Iberian Peninsula population, no significant distances were observed. The interpopulation genetic distances (FST coefficients) to the present database ranged from FST = 0.0016 between Macapá and Belém to FST = 0.0036 between Macapá and the Iberian Peninsula.

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Section: Figurementioning

confidence: 99%

mentioning

confidence: 99%

Allelic frequencies and statistical data obtained from 12 codis STR loci in an admixed population of the Brazilian Amazon

Francez

Rodrigues

Frazão³

et al. 2011

Genet. Mol. Biol.

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“…However, when comparing studies in other states such as Santa Catarina, Rio Grande do Sul, Rio de Janeiro, Mato Grosso do Sul, and Amazonas, it is possible to identify a preliminary average discrepancy between Ho and He which is lower than 0.05 for the Brazilian population [ 13 , 14 , 15 , 16 , 17 ], revealing a high genetic variation in the studied populations.…”

Section: Discussionmentioning

confidence: 97%

“…Among observed studies, the most polymorphic loci were D2S1338, D18S51, D21S11, PENTA E, FGA, and SE33. In all studies, the least polymorphic locus was TPOX [ 10 , 11 , 12 , 13 , 14 , 15 , 16 , 17 , 18 , 19 , 20 ]. This study of Bahia’s population identified the SE33, D21S11, and FGA loci as having the highest polymorphism, with SE33 being found only in the Portuguese, Brazilian, and Northeastern Brazil studies [ 21 ].…”

Section: Discussionmentioning

confidence: 99%

“…In addition to allelic analysis, the present study provides statistical and forensic data for the 25 analyzed STR loci in Bahia’s population. Other Brazilian studies realized in this category present an average of 8 to 13 analyzed loci [ 10 , 11 , 12 , 13 , 14 , 15 , 16 , 17 , 18 , 19 , 20 ]. The present study thus promotes greater quantitative certainty for the genetic data of the Brazilian population.…”

Section: Discussionmentioning

confidence: 99%

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Allele Frequencies and Forensic Data of 25 STR Markers for Individuals in Northeast Brazil

Santos

Filho

Silva

et al. 2023

Genes

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Identifying DNA markers such as Short Tandem Repeats (STR) can be used to investigate genetic diversity based on levels of heterozygosity within and between populations. Allele frequencies and forensic data for STRs were obtained from a sample of 384 unrelated individuals living in Bahia, Northeastern Brazil. Thus, the present study aimed to identify the allele frequency distribution, in addition to the forensic and genetic data, of 25 STR loci in the population of Bahia. Buccal swabs or fingertip punctures were utilized to amplify and detect 25 DNA markers. The most polymorphic loci were SE33 (43), D21S11, and FGA (21). The least polymorphic were TH01 (6), TPOX, and D3S1358 (7). Forensic and statistical data were obtained through data analysis, which revealed a large genetic diversity, with an average value of 0.813 for the analyzed population. The present study was more robust than previous STR marker studies and will contribute to future research on population genetics in Brazil and worldwide. The results of this study allowed the establishment of haplotypes found in the forensic samples of Bahia State to serve as a reference in the elucidation of criminal cases and paternity tests, as well as population and evolutionary investigations.

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STR data for 15 autosomal STR markers from Paraná (Southern Brazil)

Alves

Leite²,

Sotomaior

et al. 2013

Int J Legal Med

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Allelic frequencies for 15 STR autosomal loci, using AmpFℓSTR® Identifiler™, forensic, and statistical parameters were calculated. All loci reached the Hardy-Weinberg equilibrium. The combined power of discrimination and mean power of exclusion were 0.999999999999999999 and 0.9999993, respectively. The MDS plot and NJ tree analysis, generated by FST matrix, corroborated the notion of the origins of the Paraná population as mainly European-derived. The combination of these 15 STR loci represents a powerful strategy for individual identification and parentage analyses for the Paraná population.

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15 STR loci frequencies in the population from Santa Catarina, Southern Brazil

Cited by 7 publications

References 12 publications

Allelic frequencies and statistical data obtained from 12 codis STR loci in an admixed population of the Brazilian Amazon

Allelic frequencies and statistical data obtained from 12 codis STR loci in an admixed population of the Brazilian Amazon

Allele Frequencies and Forensic Data of 25 STR Markers for Individuals in Northeast Brazil

STR data for 15 autosomal STR markers from Paraná (Southern Brazil)

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