Single-chain Fv antibody fragments binding different flavin forms [ 10-(5'-carboxybutyl-)flavin (Fl<,J and IO-(S'-carboxybutyl)-1,5-dihydroflavin (Fired)] have been generated from an antibody phage-display library to study how a protein environment regulates the redox potential, starting from a protein other than a natural flavoprotein. These 'flavobodies' are characterized by time-resolved and steady-state fluorescence spectroscopy, by competitive ELISA methods (mapping of the antigen-binding site), and by molecular modelling. The three-dimensional models of the antigen-binding sites are consistent with the experimental results. Binding of anti-Fl,,, 5 to flavin increases the redox potential, mainly due to an Arg residue interacting with the flavin N1. Thus anti-Fl,, 5 shows an 'oxidase-like' redox-potential behaviour, confirming the idea that positively charged residues in the vicinity of N1 increase the redox potential. The results obtained with anti-Fl,,, which do not resemble a natural flavoprotein, show that when the pyrimidine-like nucleus of the flavin is not involved in binding, the redox potential is not significantly affected. These results are in contrast to those obtained with chicken riboflavin-binding protein.Keywords: flavin; flavoprotein oxidase; antibody-binding domain ; modeling ; phage display.Flavin acts as cofactor in many redox enzymes and electrontransferring proteins. These flavin-containing enzymes catalyse a wide variety of biochemical reactions varying from oxidasetype to dehydrogenase-type and monooxygenase-type of reactions. This versatility sets flavoproteins apart from most other cofactor-dependent enzymes which, in general, only catalyse a single type of reaction (Ghisla and Massey, 1989). The redoxactive part of the flavin is the isoalloxazine ring, which can exist in oxidized flavoquinone, one-electron-reduced flavosemiquinone and two-electron-reduced flavohydroquinone states. The flavin redox potentials depend on the nature of the active site in which the flavin resides and vary largely among different flavoproteins (Stankovich, 1990). The role of the protein environment of the flavin cofactor in modulating the redox potential is still not properly understood. Here we have investigated the structural and redox properties of monoclonal antibodies elicited against oxidised and two-electron-reduced flavin and compared them with those of 'natural' flavoproteins.The isoalloxazine moiety of the flavin is amphipatic, consisting of a hydrophobic benzene-like part (ring A) and a hydrophilic pyrimidine moiety (ring C: Fig. 1). The N5 atom in ring B is electron deficient and is the site where the electrons enter the isoalloxazine (Platenkamp et al., 1987). The negative charge is spread over C4a, N5, N10 and N1 (Hall et al., 1987b). The degree to which this negative charge is stabilised or destabilised is an important factor governing the redox potential: a positive charge in the protein around ring C will contribute to increase the redox potential, whereas a negatively charged or hydro...