1 The pineal hormone melatonin exerts its biological effects through specific, high affinity G-protein coupled receptors. Recently, three melatonin receptor subtypes (Mella, Mellb and Mel,c) have been cloned. Neither the cloned subtypes, nor the native receptors have yet been compared in a detailed pharmacological analysis. 2 The present study examined the structure-activity relationships of a series of 21 melatonin analogues, by comparing their potency on the pigment aggregation response in Xenopus laevis melanophores with their affinity in radioligand binding competition studies in chicken retina and sheep pars tuberalis (PT), two tissues in which melatonin is known to mediate a biological response. 3 All but four of the analogues were full melatonin receptor agonists producing a concentration-related redistribution of pigment granules in cultured Xenopus melanophores. The remaining analogues produced little pigment aggregation at 10 gM. 4 Saturation studies with 2-[1251]-iodomelatonin identified a single binding site in the chicken retina and sheep PT membranes, with a KD of 36.6 + 2.8 and 37.3 + 4.3 pM, and a maximal number of binding sites (Bmax) of 16.6 + 0.5, and 40.1 + 1.7 fmol mg-' protein, respectively. 5 Comparison of the potency/affinity of the analogues for the binding sites gave a highly significant correlation in each case, retina/melanophore, r=0.97 (P<0.001, n= 17), PT/melanophore, r=0.97 (P<0.001, n=17) and PT/retina, r=0.98 (P<0.001, n=21). 6 Despite their large range in affinity and structural diversity these melatonin agonists were unable to distinguish between melatonin receptors in the chicken retina, sheep pars tuberalis and Xenopus melanophores.