We present a Pakistani kinship afflicted with a syndrome with features including
short stature, reduced sitting height, orofacial symptoms including prominent
forehead and thick eyebrows, short and broad thorax, and variable features such
as long philtrum, short broad neck, barrel chest, thoracic kyphoscoliosis,
hypogonadism, and hypospadias. Phenotypic variation even within different
sibships was considerable. The unique combination of the phenotypic
characteristics prompted us to determine the shared homozygosity regions in
patient genomes and the pathogenic variants by next generation technologies like
single nucleotide polymorphism (SNP) genotyping and whole exome sequencing
(WES). Through these analyses, we detected homozygous
OBSL1
c.848delG (p.Gly283AlafsTer54) as the causal variant. Biallelic variants in
OBSL1
are known to cause Three M Syndrome 2 (3M2), a rare
disorder of growth retardation with characteristic facial dysmorphism and
musculoskeletal abnormalities. Affected members of the family do not have the
3M2 hallmark features of dolichocephaly, hypoplastic midface, anteverted nares,
low nasal bridge, pectus excavatum, sacral hyperlordosis, spina bifida occulta,
anterior wedging of thoracic vertebrae, prominent heels, and prominent talus.
Moreover, they have some variable features not typical for the syndrome such as
round face, disproportionate short stature, barrel chest, thoracic
kyphoscoliosis, hypogonadism, and hypospadias. Our study facilitated genetic
diagnosis in the family, expanded the clinical phenotype for 3M2, and unraveled
the considerable clinical variation within the same kinship. We conclude that
unbiased molecular analyses such as WES should be more integrated into
healthcare, particularly in populations with high parental consanguinity, given
the potential of such analyses to facilitate diagnosis.