Micro-milling technology is an efficient method for machining titanium alloy thin-walled micro parts. However, the machinability of thin-walled microstructures can be greatly affected by chatters due to their weak stiffness, especially in difficult-to-machine materials like titanium alloys. In order to obtain high-quality thin-walled micro parts, a chatter mitigation strategy is presented and its mechanism is analyzed in this paper. The titanium alloy workpiece is submerged into a kind of high-viscosity fluid, which can improve machining stability by increasing the damping of the micro-milling process. The stability lobe diagrams (SLD) are established, and the machinability is analyzed and compared under different machining conditions. The cutting force, surface roughness, micro-tool wear, and dimension accuracy of thin-walled micro parts are selected as the evaluation criteria for the machinability assessment. Well-designed micro-milling experiments are carried out under dry, lubrication, and chatter mitigation conditions using the same cutting process parameters. The results show that the use of cutting fluid can effectively improve machinability under stable cutting processes, but the effect of cutting fluid is weakened under chatter machining. The proposed chatter mitigation strategy can suppress regenerative chatter throughout the micro-milling process for thin-walled micro parts and improve their machinability comprehensively.