To overcome incomplete point cloud data obtained from laser scanners scanning complex surfaces, multi-viewpoint cloud data needs to be aligned for use. A hybrid improved SAC-IA with a KD-ICP algorithm is proposed for local point cloud alignment optimization. The scanned point cloud data is preprocessed with statistical filtering, as well as uniform down-sampling. The sampling consistency initial alignment (SAC-IA) algorithm is improved by introducing a dissimilarity vector for point cloud initial alignment. In addition, the iterative closest point (ICP) algorithm is improved by incorporating bidirectional KD-tree to form the KD-ICP algorithm for fine point cloud alignment. Finally, the algorithms are compared in terms of runtime and alignment accuracy. The implementation of the algorithms is based on the Visual Studio 2013 software configurating point cloud library environment for testing experiments and practical experiments. The overall alignment method can be 40%~50% faster in terms of running speed. The improved SAC-IA algorithm provides better transformed poses, combined with the KD-ICP algorithm to select the corresponding nearest neighbor pairs, which improves the accuracy, as well as the applicability of the alignment.