Experiments were designed to test the idea that A kinase anchor proteins (AKAPs) tether regulatory subunits (RII) of protein kinase AII (PKAII) isoforms to surfaces of organelles that are bounded by phospholipid bilayers. S-AKAP84, one of three RII-binding proteins encoded by a single-copy murine gene, was studied as a prototypic organelle-associated AKAP. When S-AKAP84 was expressed in HEK293 cells, the anchor protein was targeted to mitochondria and excluded from other cell compartments. The RII tethering site is located in the cytoplasm adjacent to the mitochondrial surface. Endogenous RII subunits are not associated with mitochondria isolated from control cells. Expression of S-AKAP84 in transfected HEK293 cells triggered a redistribution of 15% of total RII to mitochondria. Thus, the tethering region of the organelle-inserted anchor protein is properly oriented and avidly binds RII (PKAII) isoforms in intact cells. Two critical domains in S-AKAP84 were mapped. Residues 1 to 30 govern insertion of the polypeptide into the outer mitochondrial membrane; amino acids 306 -325 constitute the RII-binding site. Properties established for S-AKAP84 in vitro and in situ strongly suggest that a physiological function of this protein is to concentrate and immobilize RII (PKAII) isoforms at the cytoplasmic face of a phospholipid bilayer.Type II isoforms of cAMP-dependent protein kinase (PKAII␣ and PKAII) 1 are attached to cytoskeleton or organelles via binding of their regulatory subunits (RII␣, RII) with protein kinase A anchor proteins (AKAPs) (1-3). Prototypic neuronal anchor proteins (bovine AKAP75 and its human (AKAP79) and rat (AKAP150) homologs) have a conserved binding site for RII subunits and domains that non-covalently link AKAP⅐PKAII complexes to the dendritic cytoskeleton of neurons and the cortical actin cytoskeleton of non-neuronal cells (4 -9). Both cytoskeletal locations are closely apposed to the plasma membrane. Therefore, anchored PKAII is placed in proximity with a signal generator (hormone/neurotransmitter-activated adenylate cyclase) and multiple PKA substrate/effector proteins (e.g. myosin light chain kinase, microtubule-associated protein-2, ion channels, serpentine receptors that couple with the GTPbinding protein Gs). This arrangement creates a target site for cAMP action (reviewed in Ref. 1).Distinct RII-binding proteins mediate association of PKAII isoforms with peroxisomes, mitochondria, and other organelles in a variety of cell types (1, 2, 10, 11). These AKAPs have 20-residue RII-binding sites that are homologous with the RIIbinding domain in AKAP75 (1, 2, 6, 10, 11). Otherwise, sequences of non-neuronal AKAPs diverge among themselves and differ from the sequence of AKAP75. Potential targeting domains for some non-neuronal AKAPs have been inferred from motifs in derived amino acid sequences and the distribution of the anchor proteins observed upon subcellular fractionation and immunostaining (1, 2, 10, 11). However, an experimental demonstration that an anchor protein governs accumulatio...