“…In TPI (2), the iminopyrrolidine ring will be essentially fully protonated since the pK a of the protonated form of the close structural analogue 7-methyl-2,3,3a,4,5,6-hexahydro-7H-pyrrolo[2,3-b]pyridine is 11.5. 45 Overall therefore, TPI and the 5-halo-6-[(2′-aminoimidazol-1′-yl)methyl]uracils (3, X ) Cl, Br) are expected to be zwitterionic at pH 7.4. In contrast, since uracil has a pK a of 9.43 46 (with both N-H groups contributing to the observed value), the situation for 3, X ) H is more complex, all four species (zwitterionic, neutral, anionic and cationic) are likely to coexist in significant amounts (especially at 37 °C), and the estimation of their proportions is uncertain (even discounting ionization at 'uracil'-N3, four micro pK a values would be required); however, the proportion of the required zwitterion is likely to be small and binding to HPO 4 2and cationic Arg202 and Lys221 at the active site will be compromised (to save space, Arg202 and Lys221 are not shown in Scheme 1b).…”