The reaction of L5 178Y lymphoblast cell chromatin with the alkylating agent bis(2-chloroethy1)-methylamine has been studied as a function of time, pH and reagent concentration. The reaction with DNA of chromatin from which the proteins were dissociated, as well as with purified calf thymus DNA, was studied in parallel. The extent of alkylation of DNA in intact chromatin was 4-5 times as much as in parallel free DNA samples; up to 4 % of nucleotide base pairs were substituted. The extent of monofunctional substitution of the proteins was similar, on a weight basis, to that of DNA. Chromatographic analysis of the depurinated products showed that in chromatin, as in DNA, position N-7 of guanine is the major site of reaction. Up to 25 % of the reaction products were guanines cross-linked as bis(2-guanin-7-yl-ethyl)methylamine, indicating a considerable degree of DNA-DNA cross linking. Column analysis shows that up to 40% of the nuclear proteins are cross-linked to DNA at 10 mM bis(2-chloroethyl)methylamine. The increased reactivity of intact chromatin is interpreted in terms of a conformational change in the position of the DNA bases when in the organized nucleohistone complex.The nucleotide bases of the DNA moiety of chromatin are the sites of genetic specificity. Their availability in chromatin for interaction with outside molecules has been studied with a variety of reversibly associating intercalating molecules, including actinomycin D [l], quinacrine [2,3], ethidium bromide [4] and others [5].We thought it of importance to characterize reagents which interact covalently with the DNA moiety of chromatin. Covalent binding permits isolation and detailed characterization of the reacted fragments at a variety of states of nuclear activity. Bis(2-chloroethy1)methylamine (nitrogen mustard, HN2), the parent compound of the nitrogen mustards, is known to attack preferentially the nitrogen in position 7 of guanine [6-81. This position resides in the large groove of double-stranded DNA and is therefore available for interaction with regulatory proteins. Nitrogen mustard is also known for its capacity for interstrand cross-linking of DNA [9]; it can thus serve as a tool to map the proximity of DNA chains in the organized nucleohistone complex. Although considerable knowledge has accumulated regarding the action of bis- action with intact chromatin has not yet been studied.In this paper a quantitative study of the interaction of bis(2-chloroethyl)methylamine with solubilized chromatin is described. The extent of its reaction with DNA was unexpectedly found to exceed considerably the reaction with DNA free in solution. This observation is discussed in relation to present concepts of chromatin structure.
MATERIALS AND METHODS
ReagentBis(2-chloroethyl)methylamine (HN2, nitrogen mustard), chloride salt, was obtained from Sigma Co. (St Louis, Mo., U.S.A. ; caution : the non-protonated, alkaline form is extremely toxic; consult a safety handbook). Bis(2-chloro [ 1 ,2-14C]ethyl)methylamine was obtained from California Bionuclear ...