“…Our observations between species were reasonable in contrast to the transcriptomic variation of populations within Crassostrea virginica , where two reef‐source populations showed a greater environment effect than genetic effect on gene expression differences in response to different salinity environments (Eierman & Hare, 2016 ). Furthermore, transporters (especially SLCs), taurine metabolism pathway, and pyruvate metabolism pathway enriched in the salinity‐correlated module were in response to salinity gradients, which were supported by those of previous studies (SLCs: Boyle et al, 2015 ; Choi et al, 2003 ; Hoglund et al, 2011 ; Hui et al, 2014 ; Jiang et al, 2020 ; Kurita et al, 2008 ; Li et al, 2021 ; Menchini & Chaudhry, 2019 ; Nakajima et al, 2013 ; Wang et al, 2015 ; Wang et al, 2020 ; Wu et al, 2021 ; Zhou et al, 2018; Taurine: Meng et al, 2013 ; Wu et al, 2021 ; Pyruvate: Derakhshani et al, 2020 ; Gullian et al, 2018 ; Wang, Li, et al, 2017 ). These salinity‐responsive pathways also exhibited divergent responses between two oyster species for their enrichment of DEG sets for the species effect and in species‐correlated modules, emphasizing the role of these mechanisms in the formation of divergence in salinity adaptation between the two species.…”