2004
DOI: 10.1186/1475-2875-3-9
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Abstract: Background: Surveillance for drug-resistant Plasmodium falciparum should be a component of malaria control programmes. Real-time PCR methods for the detection of parasite singlenucleotide polymorphisms (SNPs) and gene amplification could be useful survellance tools.

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Cited by 41 publications
(17 citation statements)
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“…We used TaqMan real-time PCR methods as previously described (21)(22)(23)(24), using an ABI 7500 machine (Applied Biosystems, Warrington, United Kingdom), to evaluate P. falciparum multidrug resistance gene 1 (Pfmdr1) copy number and single-nucleotide polymorphisms (SNPs) at codon positions 86, 184, 1034, and 1042 and to conduct P. falciparum chloroquine resistance transporter gene (Pfcrt) haplotyping to detect variants of alleles 72 to 76. A PCR restriction fragment length polymorphism method (25) was used to screen samples for the Pfmdr1 SNP at codon 1246.…”
Section: Methodsmentioning
confidence: 99%
“…We used TaqMan real-time PCR methods as previously described (21)(22)(23)(24), using an ABI 7500 machine (Applied Biosystems, Warrington, United Kingdom), to evaluate P. falciparum multidrug resistance gene 1 (Pfmdr1) copy number and single-nucleotide polymorphisms (SNPs) at codon positions 86, 184, 1034, and 1042 and to conduct P. falciparum chloroquine resistance transporter gene (Pfcrt) haplotyping to detect variants of alleles 72 to 76. A PCR restriction fragment length polymorphism method (25) was used to screen samples for the Pfmdr1 SNP at codon 1246.…”
Section: Methodsmentioning
confidence: 99%
“…Samples were considered to have an amplified pfmdr1 gene if the copy number was Ͼ1.5. DNA samples were also genotyped at pfmdr1 codons 86, 184, 1034, and 1042 for single nucleotide polymorphism (SNP) analysis by real-time PCR on an ABI sequence detector 7000 (Applied Biosystems, Warrington, United Kingdom), as previously described (28). Samples were also probed for an additional pfmdr1 SNP (Y1246D) using a PCR-restriction fragment length polymorphism method (29).…”
Section: Methodsmentioning
confidence: 99%
“…All open reading frame sequences of pfcrt were amplified from P. falciparum genomic DNA (63). From clonal lines chosen for further study, the entire open reading frame of pfmdr1, or known polymorphic regions of pfmdr1, were amplified from genomic DNA using primers described previously (44,51). PCR products were directly sequenced using an ABI 3730xl DNA analyzer (Applied Biosystems).…”
Section: Methodsmentioning
confidence: 99%