1999
DOI: 10.1038/6657
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Abstract: The X-ray crystal structures of the catalytic domain of human collagenase-3 (MMP-13) and collagenase-1 (MMP-1) with bound inhibitors provides a basis for understanding the selectivity profile of a novel series of matrix metalloprotease (MMP) inhibitors. Differences in the relative size and shape of the MMP S1' pockets suggest that this pocket is a critical determinant of MMP inhibitor selectivity. The collagenase-3 S1' pocket is long and open, easily accommodating large P1' groups, such as diphenylether. In co… Show more

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Cited by 227 publications
(24 citation statements)
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“…MMP13 lends itself to specific inhibition due to a relatively deep S1′ pocket [25]. Computational modeling has led to the identification of a panel of pyrimidinetrione-based inhibitors that are selective for MMP13 due to their binding in its deep S1′ pocket [26], [27].…”
Section: Introductionmentioning
confidence: 99%
“…MMP13 lends itself to specific inhibition due to a relatively deep S1′ pocket [25]. Computational modeling has led to the identification of a panel of pyrimidinetrione-based inhibitors that are selective for MMP13 due to their binding in its deep S1′ pocket [26], [27].…”
Section: Introductionmentioning
confidence: 99%
“…Matrix metalloproteinase (MMP)-1, commonly known as interstitial collagenase, is able to cleave interstitial collagens [1]. It belongs to a superfamily of zinc-dependent endopeptidases that are capable of degrading extracellular matrix components [2].…”
Section: Introductionmentioning
confidence: 99%
“…The same model has also been used to select potent molecules from 10,000 library molecules designed using Scaffold Hoping (Knowledge based screening). Library molecules were generated based on the knowledge of binding interaction of known ligands reported with MMP-1, MMP-8 & MMP-13 and also the common features necessary for biological activity of molecule [2426]. These molecules were built using Cerius2 software [27] and conformations for each compound were generated using best conformational analysis.…”
Section: Methodsmentioning
confidence: 99%
“…Differences in the relative size and shape of the S1' pockets in MMP-1, MMP-8 and MMP-13 suggest that this pocket is a critical determinant of MMP inhibitor selectivity [1]. The quite flexible loop forms a major portion of the S1' pocket and it undergoes a conformational change on inhibitor binding [14, 15]. The loop is of the same length in MMP-8 and MMP-13 and two residues are shorter in MMP-1[16].…”
Section: Introductionmentioning
confidence: 99%