Differential composition of GABAA receptor (GABAAR) subunits underlies the variability of fast inhibitory synaptic transmission; alteration of specific GABAAR subunits in localized brain regions may contribute to abnormal brain states such as absence epilepsy. We combined immunocytochemistry and high-resolution ImmunoGold electron microscopy to study cellular and subcellular localization of GABA AR ␣1, ␣3, and 2/3 subunits in ventral posterior nucleus (VP) and reticular nucleus (RTN) of control rats and WAG/Rij rats, a genetic model of absence epilepsy. In control rats, ␣1 subunits were prominent at inhibitory synapses in VP and much less prominent in RTN; in contrast, the ␣3 subunit was highly evident at inhibitory synapses in RTN. 2/3 subunits were evenly distributed at inhibitory synapses in both VP and RTN. ImmunoGold particles representing all subunits were concentrated at postsynaptic densities with no extrasynaptic localization. Calculated mean number of particles for ␣1 subunit per postsynaptic density in nonepileptic VP was 6.1 ؎ 3.7, for ␣3 subunit in RTN it was 6.6 ؎ 3.4, and for 2/3 subunits in VP and RTN the mean numbers were 3.7 ؎ 1.3 and 3.5 ؎ 1.2, respectively. In WAG/Rij rats, there was a specific loss of ␣3 subunit immunoreactivity at inhibitory synapses in RTN, without reduction in ␣3 subunit mRNA or significant change in immunostaining for other markers of RTN cell identity such as GABA or parvalbumin. ␣3 immunostaining in cortex was unchanged. Subtle, localized changes in GABAAR expression acting at highly specific points in the interconnected thalamocortical network lie at the heart of idiopathic generalized epilepsy.absence epilepsy ͉ inhibition ͉ quantitative electron microscopy T he idiopathic generalized epilepsies are characterized by abrupt losses of consciousness during which the electroencephalogram (EEG) exhibits paroxysmal, high-amplitude spike and wave complexes at Ϸ3Hz and lasting from a few seconds to Ͻ1 min. The loss of consciousness is referred to as an absence seizure or petit mal. Spike and wave activity reflects paroxysmal discharging of neurons in the network of reentrant thalamocortical and corticothalamic connections (1-3). Linkage studies in humans suggest involvement of genes encoding GABA A receptor (GABA A R) subunits of the ␣, , ␥, and ␦ families in absence epilepsy (4-7), and experimental studies in animals point to molecular genetic abnormalities in GABA A R signaling (8, 9). The forms by which genetic anomalies in GABA A R manifest themselves are multiple and varied. They can involve receptor synthesis and trafficking within neurons, changes in ratios of alternatively spliced mRNAs, and translocations of receptor subunits to membrane sites not normally occupied (10-14).The GABAergic neurons of the thalamic reticular nucleus (RTN) play a key role in synchronizing activity in the thalamocortical network during states of consciousness (15, 16), and GABA A R antagonists applied to its cells can transform 7-to 14-Hz sleep spindle oscillations generated in the ...