Gregarine apicomplexans are closely related to parasites such as Plasmodium, Toxoplasma, and Cryptosporidium, which are causing severe health and economic burdens. Colonizing only invertebrates and having no obvious medical relevance, they are mostly ignored in 'omics' studies, although gregarines are the most basal apicomplexans and therefore key players in the understanding of the evolution of parasitism in the Apicomplexa from free-living ancestors. They belong to the largest exclusively parasitic phylum, but is this perception actually true? The effects of gregarines on their hosts seem to cover the whole spectrum of symbiosis from mutualistic to parasitic. We suggest future research directions to understand the evolutionary role of gregarines, by elucidating their biology and interaction with their hosts and the hosts' microbiota. Parasitism in the Apicomplexa The phylum Apicomplexa contains unicellular parasites (currently more than 6000 named species) and is well known for its notorious pathogens of humans and livestock, such as Plasmodium (causative agent of malaria; mainly infecting humans, humanoids), Toxoplasma (toxoplasmosis; humans, cats), Eimeria (eimeriosis; poultry, cattle, ruminants), Theileria (theileriosis; cattle), Babesia (babesiosis; cattle, humans); Isospora (isosporiasis; humans), Cyclospora (cyclosporiasis; dogs, humans), and Cryptosporidium (cryptosporidiosis; humans, most livestock). These pathogens are of great public health concern and economic relevance, and they affect millions of people each year [1]. They all have intracellular life stages with the exception of Cryptosporidium [2], which has intracellular and extracytoplasmic stages [3,4]. Apicomplexans infect both invertebrates and vertebrates and have complex life cycles that differ considerably between the abovementioned groups [5] (Figure 1). Most of these life cycles involve at least two host species (i.e., a heteroxenous life cycle) (see Glossary). The apicomplexan clade is referred to in publications and textbooks as the largest phylum of eukaryotes that consists of obligate parasitic (Box 1) species only; but is this assumption really true for all apicomplexan species? The Gregarines Within the apicomplexans, gregarines are a unique subgroup that infects a wide range of freshwater, marine, and terrestrial invertebrates (almost exclusively). Different views concerning the taxonomy of the gregarines are emerging [6,7], but comprehensive evidence for a reliable overall taxonomic review is still missing. The latest review of eukaryotes still refers to the historic major groups Archigregarinorida, Eugregarinorida, and Neogregarinorida, mainly based on habitat, host range, and trophozoite morphology, to which is added the Cryptogregarinorida to accommodate Cryptosporidium [8] (Figure 1). Archigregarines are the most ancestral group, with a mix of ancestral and derived features, occurring in marine habitats only. Eugregarines can be found in marine, freshwater, and terrestrial habitats with large trophozoites that are morphologic...