RNAs have been implicated in the assembly and stabilization of large-scale chromatin structures including centromeric architecture; unidentified RNAs are integral components of human pericentric heterochromatin and are required for localization of the heterochromatin protein HP1 to centromeric regions. Because satellite repeats in centromeric regions are known to be transcribed, we assessed a role for noncoding centromeric RNAs in the structure and function of the centromere. We identified minor satellite transcripts of 120 nt in murine cells that localize to centromeres and accumulate upon stress or differentiation. Forced accumulation of 120-nt transcripts leads to defects in chromosome segregation and sister-chromatid cohesion, changes in hallmark centromeric epigenetic markers, and mislocalization of centromere-associated proteins essential for centromere function. These findings suggest that small centromeric RNAs may represent one of many pathways that regulate heterochromatin assembly in mammals, possibly through tethering of kinetochore-and heterochromatin-associated proteins.centromere ͉ centromeric transcripts ͉ kinetochore T he centromere is a highly specialized structure needed for faithful chromosome segregation during cell division and correct inheritance of genetic information (1). Centromeric regions provide an anchor point for the spindle apparatus, which pulls the separating chromosomes to opposite poles of the dividing cell. In addition, centromeres ensure that sister chromatids are kept together until the appropriate point in the division process.In the absence of conserved DNA sequences among species, two features are considered as a hallmark for centromeric regions, i.e., deposition of the histone H3 variant CENP-A (2, 3) and the constitutively heterochromatic nature of the region associated with the presence of long tandem repeats of short DNA sequences (4, 5). The mouse genome contains two classes of centromeric repetitive sequences, termed major and minor satellites, organized in largely uninterrupted blocks of tandem repeats. Cytological detection of these clusters shows distinct localization, major satellites being associated with pericentromeric regions, whereas minor satellites were detected at the primary constriction of condensed mitotic chromosomes (6, 7). The nature of protein complexes recruited to these satellite repeats also appears to be distinct. The constituents of the kinetochore are recruited, most directly by CENP-A, to minor satellites in a hierarchical and dynamic manner over the progression of the cell cycle (8), whereas heterochromatinassociated proteins, including the heterochromatin protein 1 (HP1), have been shown to mainly concentrate at pericentromeric regions (9). The constitutive heterochromatic state generally includes several typical epigenetic marks such as methylation of DNA (10) and methylation of the lysine 9 of histone H3 (11). These marks are, in turn, responsible for the binding of methyl-DNA-binding proteins and HP1 respectively (12-15).Other mechani...