A chromosome-level genome assembly of the darkbarbel catfish Pelteobagrus vachelli

Abstract

The darkbarbel catfish (Pelteobagrus vachelli), an economically important aquaculture species in China, is extensively employed in hybrid yellow catfish production due to its superior growth rate. However, information on its genome has been limited, constraining further genetic studies and breeding programs. Leveraging the power of PacBio long-read sequencing and Hi-C technologies, we present a high-quality, chromosome-level genome assembly for the darkbarbel catfish. The resulting assembly spans 692.10 Mb, with an impressive 99.9% distribution over 26 chromosomes. The contig N50 and scaffold N50 are 13.30 Mb and 27.55 Mb, respectively. The genome is predicted to contain 22,109 protein-coding genes, with 96.1% having functional annotations. Repeat elements account for approximately 35.79% of the genomic landscape. The completeness of darkbarbel catfish genome assembly is highlighted by a BUSCO score of 99.07%. This high-quality genome assembly provides a critical resource for future hybrid catfish breeding, comparative genomics, and evolutionary studies in catfish and other related species.

Chromosome-level genome assembly and annotation of the yellow grouper, Epinephelus awoara

“…The third-generation sequencing technology can produce genomes with high integrity through single-molecule real-time (SMRT) sequencing technology and high-throughput chromatin conformation capture (Hi-C) technology can achieve genome assembly at the chromosome level 14 , 30 – 32 . Recently, Pacific Biosciences released a new highly accurate long-read sequencer called the Revio System.…”