Abstract. the overexpression of arachidonyl lipoxygenase-12 (alOx12) in breast cancer has been reported. hence, we examined whether a non-synonymous polymorphism of alOx12 (mrna, a835G; Gln261arg) is associated with breast cancer in females. the polymorphism was detected in genomic dna by pcr-rFlp. the association between the a835G polymorphism and breast cancer risk was measured by odds ratio (OR) with 95% confidence intervals (CIs) using Fisher's exact test, and differences were considered significant at p<0.05. the frequencies of aa (wild-type), GG (homozygous variant) and aG (heterozygous variant) were 59.5, 0.9 and 39.6% in the controls, and 39.3, 2.5 and 58.2% in the breast cancer cases, respectively. the frequency of the aG genotype was higher in the patients compared to the controls (p<0.0014). the frequency of the GG variant was 2.5 and 0.9% in the cancer subjects and controls, respectively. the relative risk of breast cancer was 2 times greater (Or=2.227) at 95% ci when compared to the relative risk of the heterozygous variant. For the GG genotype, the risk was 4 times greater (Or=4.125) at 95% ci than that of the controls, suggesting a positive association of the aG genotype with the occurrence of breast cancer. the frequencies of the polymorphism were different in different populations. the arg/Gln and arg/arg variants were associated with an increased risk of breast cancer, and the frequencies of the variants differed considerably among various populations. The identification of a gene with links to breast cancer may impact screening, diagnosis and drug development.