Global warming is influenced by an increase in greenhouse gas (GHG) concentration in the atmosphere. Consequently, Net Ecosystem Exchange (NEE) is the main factor that influences the exchange of carbon (C) between the atmosphere and the soil. As a result, agricultural ecosystems are a potential carbon dioxide (CO2) sink, particularly rice paddies (Oryza sativa). Therefore, a static chamber with a portable CO2 analyzer was designed and implemented for three rice plots to monitor CO2 emissions. Furthermore, a weather station was installed to record meteorological variables. The vegetative, reproductive, and maturation phases of the crop lasted 95, 35, and 42 days post-sowing (DPS), respectively. In total, the crop lasted 172 DPS. Diurnal NEE had the highest CO2 absorption capacity at 10:00 a.m. for the tillering stage (82 and 89 DPS), floral primordium (102 DPS), panicle initiation (111 DPS), and flowering (126 DPS). On the other hand, the maximum CO2 emission at 82, 111, and 126 DPS occurred at 6:00 p.m. At 89 and 102 DPS, it occurred at 4:00 and 6:00 a.m., respectively. NEE in the vegetative stage was −25 μmolCO2 m2 s−1, and in the reproductive stage, it was −35 μmolCO2 m2 s−1, indicating the highest absorption capacity of the plots. The seasonal dynamics of NEE were mainly controlled by the air temperature inside the chamber (Tc) (R = −0.69), the relative humidity inside the chamber (RHc) (R = −0.66), and net radiation (Rn) (R = −0.75). These results are similar to previous studies obtained via chromatographic analysis and eddy covariance (EC), which suggests that the portable analyzer could be an alternative for CO2 monitoring.