The study focuses on the in silico analysis of cysteine-rich secretory
proteins and PR1-like (CAP) genes in finger lime (
Citrus
australasica
), a citrus species known for its tolerance to
Huanglongbing (HLB). We identified several PR1-like genes, all belonging to the
CRISP family within the CAP superfamily. Of them,
CaCAP
2 transcript levels increased by over 300-fold in the finger
lime compared to ‘Valencia' sweet orange upon infection with
‘
Candidatus
Liberibacter asiaticus'
(
Ca
Las). Localization studies using an EGFP
fusion showed that the CAP2 protein is predominantly located in the nucleus,
extracellular and plasma membrane. The study also examined CAP2 transcript levels in
response to cold, drought stress, and salicylic acid application. Despite
environmental stress causing apparent damage,
CAP
genes seem to play a significant role in managing both biotic and abiotic stresses.
Analysis of
CAP2
gene promoters from finger lime
and sweet orange revealed 95.33% sequence identity, with variations in
transcription factor-binding sites and cis-acting elements such as Stress Response
Element (STRE: AGGGG), which might influence the differential expression of
CAP2
between the two species. Additionally,
expressing the finger lime-derived
CaCAP2
gene in
transgenic
Nicotiana tabacum
induced a strong
defense response against
Pseudomonas syringae
pv.
Tabaci., underscoring the CAP gene's crucial role in plant defense mechanisms
against bacterial pathogens.
Supplementary Information
The online version contains supplementary material available at 10.1038/s41598-024-80868-3.