ABSTRACr Direct studies of the amino acid sequence of an Escherichia coli plasmid-coded penicillinase (penicillin amido~lactamhydrolase, EC 3.5.2.6) are in complete agreement with results derived from the translation of the DNA sequence of a related plasmid, apart from a single amino acid substitution. This penicillinase from a Gram-negative bacterium shows 30-35 identity with functionally similar enzymes from Gram-positive bacteria. This paper should be read in con unction with the report of the DNA sequence of the gene [Steliffe, J. G. (1978) Proc. NadL Acad. Sci. USA 75, 3737-374LJ. Penicillinases are enzymes that inactivate the penicillin and cephalosporin antibiotics. They have a wide distribution in bacteria (1). Most of the enzymes act by hydrolyzing the ftlactam bond, and so they are often known as f3-lactamases, or more systematically as penicillin amido-fl-lactamhydrolases (EC 3.5.2.6). Several Gram-positive bacteria produce inducible extracellular penicillinases, and large amounts of pure enzyme can readily be prepared from constitutive mutants. The amino acid sequences of proteins from Staphylococcus aureus (2, 3) and Bacillus licheniformis (2, 4) and of one of the two distinct enzymes in Bacillus cereus (5) have been studied and are sufficiently similar to one other that a common evolutionary origin and mechanism of action is indicated. The normal enzymes from Gram-negative organisms are quite different in their physiology of production, because they are generally noninducible, cell-bound, and produced at relatively low levels. Although some chromosomally coded enzymes have been recognized in Escherichia coll (6), the enzymes in the enterobacteria and the pseudomonads are often coded for by resistance transfer plasmids. The enzymes vary among themselves in substrate profile (relative activity against a range of penicillins and cephalosporins), molecular weights, and other chemical properties (7,8), but without sequence studies it was not possible to decide if the enzymes were evolutionarily related to the proteins from the Gram-positive bacteria, or even among themselves.We chose to study the enzyme from the plasmid R6K [formerly known as RTEM (9)] expressed in E. coli strain W3310, because the yields were better than for other enterobicterial penicillinases considered. A method was developed (10) for the isolation of the protein in gram quantities in apparently homogeneous form, and structural and mechanistic studies were started (11). The same enzyme system is also being used by Knox et al. (12), for the study of the three-dimensional structure of a penicillinase by x-ray crystallography.The preliminary studies (11) produced much information on peptide compositions and sequence, and suggested a possible mechanism of action for the enzyme (13). Indications were obtained of a limited sequence similarity to the enzymes from the Gram-positive bacteria, but unfortunately the information was insufficient to allow the deduction of long lengths of sequence. Recently, as a result of the interest in the t...