SUMMARYIn this paper, we present a conservative, positivity‐preserving, high‐resolution nonlinear ALE‐flux‐corrected transport (FCT) scheme for reactive transport models in moving domains. The mathematical model is a convection–diffusion equation with a nonlinear flux equation on the moving channel wall. The reactive transport is assumed to have dominant Péclet and Damköhler numbers, a phenomenon that often results in non‐physical negative solutions. The scheme presented here is proven to be mass conservative in time and positive at all times for a small enough Δt. Reactive transport examples are simulated using this scheme for its validation, to show its convergence, and to compare it against the linear ALE‐FCT scheme. The nonlinear ALE‐FCT is shown to perform better than the linear ALE‐FCT schemes for large time steps. Copyright © 2014 John Wiley & Sons, Ltd.