Erythrocyte invasion by the malaria merozoite is prevented by serine protease inhibitors. Various aspects of the biology of Plasmodium falciparum subtilisin-like protease-1 (PfSUB-1), including the timing of its expression and its apical location in the merozoite, suggest that this enzyme is involved in invasion. Recombinant PfSUB-1 expressed in a baculovirus system is secreted in the p54 form, noncovalently bound to its cognate propeptide, p31. To understand the role of p31 in PfSUB-1 maturation, we examined interactions between p31 and both recombinant and native enzymes. CD analyses revealed that recombinant p31 (rp31) possesses significant secondary structure on its own, comparable with that of folded propeptides of some bacterial subtilisins. Kinetic studies demonstrated that rp31 is a fast binding, high affinity inhibitor of PfSUB-1. Inhibition of two bacterial subtilisins by rp31 was much less effective, with inhibition constants 49 -60-fold higher than that for PfSUB-1. Single (at the P4 or P1 position) or double (at P4 and P1 positions) point mutations of residues within the C-terminal region of rp31 had little effect on its inhibitory activity, and truncation of 11 residues from the rp31 C terminus substantially reduced, but did not abolish, inhibition. None of these modifications prevented binding to the PfSUB-1 catalytic domain or rendered the propeptide susceptible to proteolytic digestion by PfSUB-1. These studies provide new insights into the function of the propeptide in PfSUB-1 activation and shed light on the structural requirements for interaction with the catalytic domain.Parasites of the genus Plasmodium are responsible for the debilitating disease malaria, which affects 300 -500 million people each year, mostly in subtropical regions (1). The continued emergence of drug-resistant parasites imposes an urgent need for a new generation of control measures. The life cycle of the malaria parasite in the human is complex, involving intracellular replication in both hepatocytes and erythrocytes, with the pathophysiological manifestations closely allied to intraerythrocytic replication. Plasmodium merozoites actively penetrate erythrocytes via a tightly regulated series of events involving proteolytic processing and release of proteins from the apical organelles and surface of the parasite (2-4). Functional maturation of many invasion-related proteins requires their proteolytic modification and, in some cases, their eventual removal from the parasite surface. These processing events can occur both in the apical organelles and at the parasite surface (4 -6), suggesting a role for proteases in different compartments of the parasite. Specific inhibitors of cysteine and serine proteases can block invasion, providing compelling evidence that these classes of parasite proteases play a major role in the invasion process (6, 7). In the case of Plasmodium falciparum, the species responsible for most fatal cases of malaria, two subtilisin-like serine proteases (subtilases) have been identified, called PfSUB-...