A Database of Segmented MRI Images of the Wrist and the Hand in Patients with Rheumatic Diseases

Tomatis, Veronica; Cimmino, Marco A.; Barbieri, Francesca; Troglio, Giulia; Parascandolo, Patrizia; Cesario, Lorenzo; Viano, Gianni; Vosilla, Loris; Pitikakis, Marios; Schiappacasse, Andrea; Moraldo, M.; Santoro, Matteo

doi:10.1007/978-3-319-23222-5_18

Cited by 9 publications

(7 citation statements)

References 21 publications

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“…The MRI acquisition are T1-weighed, obtained in different time instants through an Artoscan Tomograph from Esaote (0.2 Tesla) [9], in Fig.2 the coronal plane is shown. The size of each slice is 256x256 pixels.…”

Section: Resultsmentioning

confidence: 99%

Multi-temporal MRI carpal bone volumes analysis by principal axes registration

Ferretti

Dellepiane

2016

SPIE Proceedings

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In this paper, a principal axes registration technique is presented, with the relevant application to segmented volumes. The purpose of the proposed registration is to compare multi-temporal volumes of carpal bones from Magnetic Resonance Imaging (MRI) acquisitions. Starting from the study of the second-order moment matrix, the eigenvectors are calculated to allow the rotation of volumes with respect to reference axes. Then the volumes are spatially translated to become perfectly overlapped. A quantitative evaluation of the results obtained is carried out by computing classical indices from the confusion matrix, which depict similarity measures between the volumes of the same organ as extracted from MRI acquisitions executed at different moments. Within the medical field, the way a registration can be used to compare multi-temporal images is of great interest, since it provides the physician with a tool which allows a visual monitoring of a disease evolution. The segmentation method used herein is based on the graph theory and is a robust, unsupervised and parameters independent method. Patients affected by rheumatic diseases have been considered

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Section: Resultsmentioning

confidence: 99%

Multi-temporal MRI carpal bone volumes analysis by principal axes registration

Ferretti

Dellepiane

2016

SPIE Proceedings

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“…The experiments related to three patients for wrist bones and 1 patient for the brain district for a total of 11 volumes are reported and discussed as follows. The database (DB) used for wrist bones is described in paper [11] and is made of 100 MRI T1-weighted volumes acquired by the 0.2 Tesla ARTOSCAN (Esaote Spa, Genoa, Italy). Each volume is made of approximately 120 slices of size 256×256 pixels.…”

Section: B the Compactness Approachmentioning

confidence: 99%

An Optimal and Automatic Graph Cut Method for Biomedical Images Using Compactness Measure

Nardotto¹,

Gemme²,

Dellepiane³

2017

IJCTE

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This work aims to achieve an automatic and optimal graph cut phase based on a segmentation method presented in a previous paper. A graph-based segmentation algorithm, starting from a seed point belonging to the region of interest (ROI), is able to find the Minimum Path Spanning Tree (MPST) by using a new cost function and an optimal aggregation criterion. In order to extract the ROI, a graph-cut of the obtained tree is absolutely necessary.By definition, the main drawback of the graph-based segmentation methods is the loss of spatial and contextual information. To overcome this problem, a new method based on compactness measure is here proposedThe present approach is applied to the biomedical field, considering Magnetic Resonance Imaging (MRI) volumes of the hand and neurological districts.

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“…The database (DB) used is described in paper [7] and is made of 100 MRI T1weighted volumes acquired by the 0.2 Tesla ARTOSCAN (Esaote Spa, Genova, Italy). Each volume is made of approximately 120 images of size 256×256 pixels.…”

Section: Database: Training and Testing Phasesmentioning

confidence: 99%

Optimizing and Evaluating a Graph-Based Segmentation of MRI Wrist Bones

Nardotto

Ferretti

Gemme

et al. 2015

New Trends in Image Analysis and Processing -- ICIAP 2015 Workshops

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In this paper, a quantitative evaluation of the graph-based segmentation method presented in a previous work is performed. The algorithm, starting from a single source element belonging to a region of interest, aims at finding the optimal path minimizing a new cost function for all elements of a digital volume. The method is an adaptive, unsupervised, and semi-automatic approach.For the assessment, a training phase and a testing phase are considered. The system is able to learn and adapt to the ground truth. The performance of the method is estimated by computing classical indices from the confusion matrix, similarity measures, and distance measures.Our work is based on the segmentation and 3D reconstructions of carpal bones derived from Magnetic Resonance Imaging (MRI) volumetric data of patients affected by rheumatic diseases.

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A Database of Segmented MRI Images of the Wrist and the Hand in Patients with Rheumatic Diseases

Cited by 9 publications

References 21 publications

Multi-temporal MRI carpal bone volumes analysis by principal axes registration

Multi-temporal MRI carpal bone volumes analysis by principal axes registration

An Optimal and Automatic Graph Cut Method for Biomedical Images Using Compactness Measure

Optimizing and Evaluating a Graph-Based Segmentation of MRI Wrist Bones

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