Abstract. Greenhouse gases monitoring is important to ensure climate goals are being achieved. This study unveils the potential of using atmospheric tall towers in direct flux measurements, bridging the gap between atmospheric and ecosystem monitoring networks. The ICOS Cities (PAUL) project aims to monitor CO2 emissions in urban areas, where concentrated emissions make them key targets for climate change mitigation. This study explores synergy between ICOS atmospheric and ecosystem networks by utilizing slow-response analysers (~2 sec) on tall atmospheric towers for ecosystem studies using the Eddy Covariance method. A standard setup with an ultrasonic anemometer and an infrared (IR) fast-response CO2 analyser was installed and compared with measurements from an existing cavity ring down spectroscopy (CRDS) analyser measuring CO2, CO, and CH4. Deployed on the 100 m Saclay tower near Paris, covering a 43.9 km² 80 % footprint with heavy traffic roads, a nearby heating plant, and a forest, the setup addressed technical challenges and height-induced complexities. Corrections for flux attenuation by high frequency losses were limited to <20 % on average for all stabilities, around 11 % for unstable conditions. Wavelet-based eddy covariance allowed 18–34 % more data exploitation than standard EC enabling the analysis of non-stationary fluxes, particularly from a point source such was the case of a heating plant. The estimated storage term produced by atmospheric profiling measurements reported an expected increase at night, destocking during the first half of the day. Storage term represented at times more than half of the surface flux. Elevated mean fluxes for CO2 (10 μmolm−2s−1) and CH4 (200 nmolm−2s−1) were observed from the heating plant wind direction during December and January. Conversely, the forest direction exhibited the strongest sink among all wind directions, with −4 μmolm−2s−1 during July and August. These results demonstrate the feasibility and versatility of utilizing atmospheric towers for urban emission monitoring, offering valuable insights for emission monitoring strategies worldwide.