A denaturing gradient gel electrophoresis (DGGE) assay was used to detect mitochondrial DNA (mtDNA) sequence heteroplasmy in 160 hairs from each of three individuals. The HV1 and HV2 heteroplasmic positions were then identified by sequencing. In several hairs, the heteroplasmic position was not evident by sequencing and dHPLC separation of the homoduplex/heteroduplex species was carried out with subsequent reamplification and sequencing to identify the site. The overall detection frequency of sequence heteroplasmy in these hairs was 5.8% (28/480) with DGGE and 4.4% (21/280) with sequencing. Sequence heteroplasmy of hair was observed even when the reference blood sample of the individual was homoplasmic. The heteroplasmic positions were not necessarily observed at sites where high rates of substitution have been reported. In two hairs, a complete single base change from the reference blood sample was observed with sequencing, while the heteroplasmic condition at that site in the hair was observed using DGGE. The DGGE results in such samples would serve as an aid in considering the possibility of match significance. In a forensic case, this situation would lead to the possibility of a failure to exclude rather than to be inconclusive.
KEYWORDS:forensic science, DNA typing, mitochondrial DNA, hair DNA, heteroplasmy, denaturing gradient gel electrophoresis MtDNA analysis is a useful tool for the identification of old or degraded biological evidentiary samples and is also important in the forensic comparison of hair samples. Heteroplasmy, the presence of two or more types of mtDNA in a single individual, was first observed in humans in association with a mitochondrial disorder (1). However, heteroplasmy in mtDNA has been reported, not only in association with mitochondrial disorders, but in the non-coding control region as well. Heteroplasmy in the control region was initially not considered to be significant (2), but it now appears to be a more frequent phenomenon than had originally been thought (3-6). Inter-and intra-generational heteroplasmy has been reported and the proportion of heteroplasmy appears to vary among different family members (5,7,8). Intra-individual heteroplasmy has also been reported in several studies (9,10). Length heteroplasmy in the HV1 and HV2 region, near nucleotide positions 16189 and 309-315, was found among hairs within a single individual (11,12) and the mechanism involved in this length heteroplasmy has been investigated (13,14). Site heteroplasmy, at a single nucleotide position in the control region of mtDNA in hairs, has also been reported and its proportions varied among hairs within a single individual (5,15). The frequency of site heteroplasmy among hairs from an individual with a homoplasmic blood sample has also been reported (16,17). Hühne et al. reported that no heteroplasmy was detected in an analysis of 15 hairs from each of 10 individuals, whereas Grzybowski reported numerous heteroplasmic positions in an analysis of 2-6 hairs each from each of 13 individuals. Be...