2021
DOI: 10.1016/j.ultramic.2021.113364
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A Fast Frozen Phonon Algorithm Using Mixed Static Potentials

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Cited by 6 publications
(5 citation statements)
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“…S5). The matching of these high-resolution HRTEM images to the crystal structure model and simulated HRTEM pattern 70 of a single chain derived from the experimental single crystal structure of Sb2Se3 44 indicates that there is minimal structural modulation in the chain upon encapsulation within a CNT. Specifically, we found that there were only very minimal differences between the direct comparison of the atomic distances of the Sb(1)-Sb(1) crystallographic sites (or Sb(2)-Sb(2); along the chain direction) and Sb(1)-Sb(2) sites (perpendicular to the chain direction) derived from the single crystal structure as compared with the experimental distances measured from HRTEM imaging of Sb2Se3@CNT.…”
Section: Resultsmentioning
confidence: 82%
“…S5). The matching of these high-resolution HRTEM images to the crystal structure model and simulated HRTEM pattern 70 of a single chain derived from the experimental single crystal structure of Sb2Se3 44 indicates that there is minimal structural modulation in the chain upon encapsulation within a CNT. Specifically, we found that there were only very minimal differences between the direct comparison of the atomic distances of the Sb(1)-Sb(1) crystallographic sites (or Sb(2)-Sb(2); along the chain direction) and Sb(1)-Sb(2) sites (perpendicular to the chain direction) derived from the single crystal structure as compared with the experimental distances measured from HRTEM imaging of Sb2Se3@CNT.…”
Section: Resultsmentioning
confidence: 82%
“…Close inspection of the high-magnification micrographs of the Sb 2 Se 3 @CNTs also show highly uniform periodicity as evidenced by the consistent lattice fringes that can be indexed closest to [101]-oriented single chains from the parent Sb 2 Se 3 bulk crystal structure ( Figures 3 A,D,E and S6 ). The matching of these high-resolution HRTEM images to the crystal structure model and simulated HRTEM pattern 71 of a single chain derived from the experimental single crystal structure of Sb 2 Se 3 40 indicates that there is minimal structural modulation in the chain upon encapsulation within a CNT. Specifically, we found that there were minimal bond distance differences between the direct comparison of the atomic distances of the Sb(1)–Sb(1) crystallographic sites (or Sb(2)–Sb(2); along the chain direction) and Sb(1)–Sb(2) sites (perpendicular to the chain direction) derived from the single crystal structure as compared to the experimental distances measured from HRTEM imaging of Sb 2 Se 3 @CNT.…”
Section: Resultsmentioning
confidence: 83%
“…Indexing of the SAED and FFT data were performed by comparing the experimental patterns with simulated patterns of the bulk single crystal structure using the SingleCrystal 4 software (CrystalMaker Software Suite). HRTEM images were simulated using the clTEM software 71 from a .xyz file of single chain Sb 2 Se 3 generated in VESTA by extending the unit cell along the b -axis, then manually excluding any atoms that are not covalently bound to the single chain.…”
Section: Methodsmentioning
confidence: 99%
“…Diffraction patterns of individual ice domains were indexed using known lattice constants of ice I c and ice I h crystal structures. Diffraction patterns of ice I c+h domains with streaks were compared to ED simulations performed with clTEM 62 to identify the contributions from I c and I h sequences.…”
Section: Methodsmentioning
confidence: 99%
“…The models of I c , I h , and I c+h were generated by MD simulations described in the next section. The TEM simulations and ED simulations were performed by using GPU-accelerated multislice algorithm in clTEM 62 . The parameters including accelerating voltage, defocus, and Cs were used based on parameters for JEM-2100F: 200 kV, 5 nm, and 1 mm, respectively.…”
Section: Methodsmentioning
confidence: 99%