“…Pathway genes in IBD-associated loci Epithelial barrier function and repair CDH1, ERRFI1, GNA12, HNF4A, ITLN1, MUC19, NKX2-3, PLA2G2E, PTGER4, REL, STAT3 Innate mucosal defence CARD9, FCGR2A, IL18RAP, ITLN1, NOD2, REL, SLC11A1 Autophagy ATG16L1, CUL2, DAP, IRGM, LRRK2, NOD2, PARK7 Apoptosis/necroptosis DAP, FASLG, MST1, PUS10, THADA Activation of adaptive immune response IL23R response pathway CCR6, IL12B, IL21, IL23R, JAK2, STAT3, STAT4, TYK2 NF-jB NFKB1, REL, TNFAIP3, TNIP1 Aminopeptidases ERAP1, ERAP2 IL-2 and IL-21 T-cell activation IL2, IL21, IL2RA Regulation of adaptive immune response TH17 cell differentiation AHR, CCR6, IL2, IL21, IL23R, IRF4, JAK2, RORC, STAT3, TNFSF15, TYK2 T-cell activation ICOSLG, IFNG, IL12B, IL2, IL21, IL23R, IL2RA, IL7R, NDFIP1, PIM3, PRDM1, TAGAP, TNFRSF9, TNFSF8 B-cell [16,17]. XIAP expression is decreased in lymphocytes and monocytes of some patients with XIAP deficiency (Figure 4(a)) [17,18], and muramyl dipeptide signaling is selectively defective in patients with XIAP deficiency (Figure 4(b)) [19]. IL-10 receptor deficiency can also be detected using assays that determine whether exogenous IL-10 suppresses lipopolysaccharide-induced cytokine production in peripheral blood mononuclear cells [20,21].…”