Fuselage panels are commonly fabricated as skin-stringer constructions, which are permitted to locally buckle under normal flight loads. The current analysis methodologies used to determine the post buckling response behaviour of stiffened panels relies on applying simplifying assumptions with semi-empirical / empirical data. Using the Finite Element method and employing non-linear material and geometric analysis procedures it is possible to model the post buckling behaviour of stiffened panels without having to place the same emphases on simplifying assumptions or empirical data. Previous work has demonstrated that using a commercial implicit code, the Finite Element method can be used successfully to model the post buckling behaviour of flat riveted panels subjected to uniform axial compression. This paper expands the compression modelling procedures to flat riveted panels subjected to uniform shear loading, investigating element, mesh, idealisation and material modelling selection, with results validated against mechanical tests. The work has generated a series of guidelines for the non-linear computational analysis of flat riveted panels subjected to uniform shear loading, highlighting subtle but important differences between shear and compression modelling requirements.