sizes are not the same. The major groove of these (major groove) is in 22 Å width, and small (minor) groove is in 12 Å width (Dickerson 1980). Due to the narrowness of the minor groove, to access to the edge of the base is difficult from the major groove. Because of this, the proteins like the transcription factor that binds to DNA's specific sequences contact the sides of the bases from the major groove (Pabo and Sauer 1984). A lot of biological test show that the intracellular primary goal of cancer drugs that is developed for to use interactions between the small molecules and DNA due to effects that damage to cancer cells and to cause death on cancer cells by dividing them is DNA. So to research of mechanism of