In this paper, I present and discuss a novel approach to parameterize a gravity model of migration using Bayesian hierarchical models with random intercepts that are free to vary by country of origin, destination, and directed origin-destination country pairs. I then utilize this model to project transboundary migration flows between African countries to the horizon 2050. To do so, I use data on projected future crop yields and water availability from the ISIMIP2b scenarios in combination with projections on future economic and demographic trends from the Shared Socio-Economic Pathways (SSPs). The results indicate that over the period 2010–2050 between 8 to 17 millions people are projected to migrate internationally on the African continent. Yet, only a small portion of these migrants will be induced to move because of climate change. To the contrary, comparisons between SSPs scenarios suggests that economic development will have a far larger impact on projected level of international migration on the continent than climate change.