Mammalian brains contain significant amounts of chondroitin sulfate (CS), dermatan sulfate (DS), and CS/DS hybrid chains. CS/DS chains isolated from embryonic pig brains (E-CS/DS) promote the outgrowth of neurites in embryonic mouse hippocampal neurons in culture by interacting with pleiotrophin (PTN), a heparin-binding growth factor. Here, we analyzed oligosaccharides isolated from E-CS/DS, which showed that octasaccharides were the minimal size capable of interacting with PTN at a physiological salt concentration. Five and eight sequences were purified from fluorescently labeled PTN-bound and -unbound octasaccharide fractions, respectively, by enzymatic digestion followed by PTN-affinity chromatography. Their sequences were determined by enzymatic digestion in conjunction with high performance liquid chromatography, revealing a critical role for oversulfated D and/or iD disaccharides in the low yet significant affinity for PTN, which is required for neuritogenesis. The critical D and iD units are GlcUA(2-O-sulfate)1-3GalNAc(6-O-sulfate) and IdoUA(2-O-sulfate)␣1-3GalNAc(6-O-sulfate), respectively, where IdoUA represents L-iduronic acid. In contrast, high affinity interactions with PTN required decasaccharides with E units (GlcUA1-3GalNAc(4, 6-O-disulfate)), B units (GlcUA(2-O-sulfate)1-3GalNAc(4-O-sulfate)), and/or their IdoUA-containing counterparts (iE and iB) in addition to D/iD units, although the biological significance of such strong interactions remains to be investigated. Thus, chain size and composition are crucial to the interaction with PTN, and PTN binds to multiple sequences in E-CS/DS chains with distinct affinity. Notably, not only heparan sulfate but also CS/DS hybrid chain structures of mammalian brains contain a high degree of microheterogeneity with a cluster of oversulfated disaccharides and appear to play roles in regulating the functions of PTN.Chondroitin sulfate (CS) 4 and dermatan sulfate (DS), a class of glycosaminoglycan (GAG)-type polysaccharides, occur covalently attached to proteoglycan (PG) core proteins (1). Like heparan sulfate (HS), another class of GAGs, CS/DS chains are abundant at cell surfaces and in the extracellular matrices. They regulate cell division, adhesion, and morphogenesis through direct binding to secreted signaling proteins, thereby modulating their activities, or through interactions with extracellular matrix molecules (2-6, for reviews, see a Ref. 7). CS and DS typically have backbones consisting of repeating disaccharide units of -GlcUA-GalNAc-and -IdoUA-GalNAc-, respectively, where IdoUA represents L-iduronic acid. Notably, hybrid chains, composed of both units in varying proportions, also exist (8). These units are modified during chain elongation by specific sulfotransferases at C-2 of GlcUA/ IdoUA and/or C-4 and/or C-6 of GalNAc in various combinations, thereby producing characteristic sulfation patterns and enormous structural diversity. These structural characteristics are strictly regulated, as revealed by the compositional analysis of CS/DS chai...