With 552 species group names available (excluding misspellings), the Microdontinae constitute the smallest of the three subfamilies of Syrphidae. Paradoxically, this subfamily is taxonomically the least organized of the three: 388 species names were previously classified in a single genus, Microdon Meigen, 1803. The present paper introduces a new generic classification of the Microdontinae, relying partly on the results of phylogenetic analyses of morphological and molecular data as published in other papers, and partly on examination of primary type specimens of 347 taxa, plus additional material, and original descriptions. A total number of 67 genus group names (excluding misspellings) are evaluated, redescribed, diagnosed and discussed, with several implications for their taxonomic status. Of these, 43 names are considered as valid genera, 7 as subgenera, 17 as synonyms. Two generic names (Ceratoconcha Simroth, 1907, Nothomicrodon Wheeler, 1924) are left unplaced, because they are known from immature stages only and cannot be reliably associated with taxa known from adults. The following 10 new genera are described by Reemer: Domodon, Heliodon, Laetodon, Menidon, Mermerizon, Metadon, Peradon, Piruwa, Sulcodon and Thompsodon. A key to all genera, subgenera and species groups is given. A total number of 26 new species are described in the following genera: Archimicrodon Hull, 1945, Ceratrichomyia Séguy, 1951, Domodon, Furcantenna Cheng, 2008, Heliodon, Indascia Keiser, 1958, Kryptopyga Hull, 1944, Masarygus Brèthes. 1908, Mermerizon, Metadon, Microdon, Paramixogaster Brunetti, 1923, Piruwa, Pseudomicrodon Hull, 1937, Rhopalosyrphus Giglio-Tos, 1891, and Thompsodon. New lectotypes are designated for Ceratrichomyia behara Séguy, 1951 and Microdon iheringi Bezzi, 1910. A total number of 267 new combinations of species and genera are proposed. New synonyms are proposed for 19 species group names. Three replacement names are introduced for primary and secondary junior homonyms: Microdon shirakii
nom. n. (= Microdon tuberculatus Shiraki, 1968, primary homonym of Microdon tuberculatus de Meijere, 1913), Paramixogaster brunettii
nom. n. (= Mixogaster vespiformis Brunetti, 1913, secondary homonym of Microdon vespiformis de Meijere, 1908), Paramixogaster sacki
nom. n. (= Myxogaster variegata Sack, 1922, secondary homonym of Ceratophya variegata Walker, 1852). An attempt is made to classify all available species names into (sub)genera and species groups. The resulting classification comprises 454 valid species and 98 synonyms (excluding misspellings), of which 17 valid names and three synonyms are left unplaced. The paper concludes with a discussion on diagnostic characters of Microdontinae.