A high throughput lipidomics method usingscheduledmultiple reaction monitoring

Abstract

Lipid compositions of cells, tissues and bio-fluids are complex, with varying concentrations and structural diversity, which makes their identification challenging. Newer methods for comprehensive analysis of lipids are thus necessary. Herein, we propose a targeted-mass spectrometry based method for large-scale lipidomics using a combination of variable retention time window and relative dwell time weightage. Using this, we detected more than 1000 lipid species, including structural isomers. The limit of detection varied from femtomolar to nanomolar range and the coefficient of variance <30% for 849 lipid species. We used this method to identify lipids altered due to Vitamin B12 deficiency and found that the levels of lipids with ω-3 fatty acid chains decreased while those with ω-6 increased. This method enables identification of by far the largest number of lipid species with structural isomers in a single experiment and would significantly advance our understanding of the role of lipids in biological processes.

A diet-independent zebrafish model for NAFLD recapitulates patient lipid profiles and offers a system for small molecule screening

“…A theoretical MRM was generated using LIPIDMAPS for identification and relative quantification of lipids. Sciex QTRAP 6500+ system in low mass range with Electrospray Ionization (ESI) probe was used for identification and relative quantification of lipid species (33).…”