Amyotrophic lateral sclerosis (ALS) is a fatal disease involving motor neuron degeneration. Effective diagnosis of ALS and quantitative monitoring of its progression are crucial to the success of clinical trials. Second harmonic generation (SHG) microendoscopy is an emerging technology for imaging single motor unit contractions. to assess the potential value of microendoscopy for diagnosing and tracking ALS, we monitored motor unit dynamics in a B6.SOD1G93A mouse model of ALS for several weeks. prior to overt symptoms, muscle twitch rise and relaxation time constants both increased, consistent with a loss of fast-fatigable motor units. These effects became more pronounced with disease progression, consistent with the death of fast fatigue-resistant motor units and superior survival of slow motor units. From these measurements we constructed a physiological metric that reflects the changing distributions of measured motor unit time constants and effectively diagnoses mice before symptomatic onset and tracks disease state. these results indicate that SHG microendoscopy provides a means for developing a quantitative, physiologic characterization of ALS progression.ALS is a paralytic, fatal neurodegenerative disease characterized by a progressive loss of motor neurons 1 . The first approved drug to treat ALS, riluzole, which only prolongs survival by a few months 2 , was approved over 20 years ago. Since then, over 50 clinical trials 3 have resulted in only 1 new recently approved drug 4 , edaravone, whose effect on survival has yet to be studied. Development of effective treatments has suffered from a lack of methods for early diagnosis and sensitive monitoring of the disease 5 . Patients enter clinical trials at late disease stages that may be too advanced to gain therapeutic benefit, and subtle improvements might be undetectable. Sensitive diagnostics are needed to reduce diagnostic delay so that earlier-stage patients can be identified and participate in clinical trials.To assess if a therapy is effective, it is also important to have biomarkers of disease progression. Currently, the Revised ALS Functional Rating Score (ALSFRS-R) -a numerical score from 0-48 based on assessments of bulbar, limb, and respiratory function 6 -is the predominant clinical method for measuring disease progression. This score is subjective and a sum of multiple metrics, some of which are highly correlated, making changes in the ALSFRS-R score hard to relate to changes in disease state 7 . As new candidate treatments enter clinical trials, the field needs quantitative diagnostics that reflect the neurophysiologic changes in ALS, provide accurate assessments of disease progression, and inform treatment development and usage.To meet this challenge, we examined whether second harmonic generation (SHG) microendoscopy might detect the physiological changes that occur in ALS. SHG microendoscopy is a minimally invasive approach to imaging the twitch contractions of individual motor units in live patients 8 . Myosin filaments within muscle sar-