New energy is the focus of attention all over the world, and research into new energy can inject new vitality into the industrial system. Hydrogen fuel cells are not only environmentally friendly, but also rich in reserves that can be used as a strategic resource for the entire country. The difficulty lies in the safe design of application equipment and the batch generation and storage of hydrogen. In addition, fuel cells have the disadvantage of a slow start-up. Based on the above problems, this paper proposes a hybrid-element method to solve the thermal-mechanical coupling model of fuel cell plate, which can effectively solve the thermal stress change, temperature field distribution and displacement change of the battery plate when working. Firstly, the hybrid-element algorithm is given for 2D plate deformation. Then, the deformation application of a 3D fuel cell plate is given. The 2D numerical results show that the hybrid finite element method (FEM) is more flexible for realizing the flexible combination of sub-mesh and finite element basis functions, and has a better mesh quality compared to the traditional constant strain triangular element (CST) adaptive FEM and quadrilateral isoparametric element (Q4) adaptive FEM. This method achieves a balance between numerical accuracy and solving efficiency for the multi-porous elastic plate. In addition, a deformation control formula is given which can display the displacement deformation and stress merge to same graph, since it is convenient to quickly compare the regions where the displacement and stress extremum appear. In short, the hybrid finite element method proposed in this paper has good mesh evaluation results, and when the number of discrete elements is equivalent, the hybrid element converges faster and the solution efficiency is higher. This paper also provides a good numerical theory and simulation reference for industrial mechanics and new energy applications.